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@aqlaboratory

AQ Laboratory

Pinned

  1. openfold openfold Public

    Trainable, memory-efficient, and GPU-friendly PyTorch reproduction of AlphaFold 2

    Python 2.6k 460

  2. genie genie Public

    De Novo Protein Design by Equivariantly Diffusing Oriented Residue Clouds

    Python 153 18

  3. rgn2 rgn2 Public

    Python 96 28

  4. proteinnet proteinnet Public

    Standardized data set for machine learning of protein structure

    Python 850 130

  5. hsm hsm Public

    Code associated with "Biophysical prediction of protein-peptide interactions and signaling networks using machine learning."

    Jupyter Notebook 66 22

Repositories

Showing 10 of 12 repositories
  • genie2 Public

    Protein structure diffusion model for unconditional protein generation and motif scaffolding

    Python 39 Apache-2.0 3 0 0 Updated May 31, 2024
  • insilico_design_pipeline Public

    In-silico design pipeline for evaluating protein structure diffusion models.

    Python 1 Apache-2.0 0 0 0 Updated May 31, 2024
  • openfold Public

    Trainable, memory-efficient, and GPU-friendly PyTorch reproduction of AlphaFold 2

    Python 2,554 Apache-2.0 460 148 (3 issues need help) 11 Updated May 29, 2024
  • hsm Public

    Code associated with "Biophysical prediction of protein-peptide interactions and signaling networks using machine learning."

    Jupyter Notebook 66 MIT 22 2 1 Updated Apr 26, 2024
  • genie Public

    De Novo Protein Design by Equivariantly Diffusing Oriented Residue Clouds

    Python 153 Apache-2.0 18 1 1 Updated Apr 21, 2024
  • rgn2 Public
    Python 96 28 3 1 Updated Nov 28, 2023
  • proteinnet Public

    Standardized data set for machine learning of protein structure

    Python 850 MIT 130 16 0 Updated Nov 18, 2020
  • hsm-web Public

    Website associated with the "Biophysical prediction of protein-peptide interactions and signaling networks using machine learning."

    HTML 7 MIT 3 0 0 Updated Jan 8, 2020
  • rgn Public

    Recurrent Geometric Networks for end-to-end differentiable learning of protein structure

    Python 326 MIT 89 17 1 Updated Aug 1, 2019
  • pnerf Public
    Python 34 MIT 6 1 0 Updated Jul 22, 2019
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