AGR's Proteins Annotations and Variants Inspector
Section TODO.
Just as most modern software, PAVI heavily relies on third-party tools and libraries for much of its core functionality. We specifically acknowledge the creators and developers of the following third-party tools and libraries:
- BioPython: Cock PJ, Antao T, Chang JT, et al. Biopython: freely available Python tools for computational molecular biology and bioinformatics. Bioinformatics. 2009;25(11):1422-1423. doi:10.1093/bioinformatics/btp163
- Nextflow: Di Tommaso P, Chatzou M, Floden EW, Barja PP, Palumbo E, Notredame C. Nextflow enables reproducible computational workflows. Nat Biotechnol. 2017;35(4):316-319. doi:10.1038/nbt.3820
- PySam: https://github.com/pysam-developers/pysam
- Samtools: Danecek P, Bonfield JK, Liddle J, et al. Twelve years of SAMtools and BCFtools. Gigascience. 2021;10(2):giab008. doi:10.1093/gigascience/giab008
Current maintainer: Manuel Luypaert