PhD Candidate in Biology at Duke University | Genetics, Genomics and Evolution
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filter_read_depth_10_90
filter_read_depth_10_90 PublicThis shell script takes the middle 80% of sites by read depth. It calculates across all samples in the vcf and then filters sites that fall outside the middle 80th percentile using bcftools
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fourfold_amino_acid_aligned
fourfold_amino_acid_aligned PublicGet fourfold degenerate pi from no-gap alignments
Python
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