Hi there 👋

You may also see my website – abolfazlarab.com

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Here are my key projects where I led the effort.

Deep-Learning

• https://github.com/abearab/Cancer-Cell-Encoder

Functional genomics

• https://github.com/ArcInstitute/ScreenPro2 | Flexible analysis of high-content CRISPR screening
• https://github.com/GilbertLabUCSF/CanDI | Cancer Data Integrator

Multi-Omics data integration and analysis

• https://github.com/GilbertLabUCSF/Decitabine-treatment
• https://github.com/abearab/sc-haircut-net

Systems Biology

• https://github.com/abearab/pager | PAGE algorithm run and downstream analysis

NGS Data analysis

• RNAseq-tutorials
• goodarzilab/WES, QuantSeq-FWD-with-UMIs, imRIP, HERVs

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Here are some of the projects I contributed at Harvard Medical School - Department of Biomedical Informatics and Zitnik Lab:

• https://github.com/mims-harvard/TDC | Artificial intelligence foundation for therapeutic science
• https://github.com/mims-harvard/PrimeKG | Precision Medicine Knowledge Graph (PrimeKG)

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