You signed in with another tab or window. Reload to refresh your session.You signed out in another tab or window. Reload to refresh your session.You switched accounts on another tab or window. Reload to refresh your session.Dismiss alert
We just got our KEGG subscription - there are a lot of .pep files there.
I can see from issues #305 and #182 that concatenation of the ftp.kegg.net/kegg/genes/organisms/*/*pep.gz files has been an options, but I look at kegg/genes/fasta/prokaryotes.pep.gz and think surely that has all the proks, so maybe combine with the euk and virus .pep files (except this doesn't have the kff files... so perhaps that is why concatenated organism .pep files are chosen)?
What does the DRAM team use these days (e.g. for their DRAM2 preps)?
Thanks for the tips,
Caitlin
The text was updated successfully, but these errors were encountered:
Dear DRAM team and others,
We just got our KEGG subscription - there are a lot of .pep files there.
I can see from issues #305 and #182 that concatenation of the ftp.kegg.net/kegg/genes/organisms/*/*pep.gz files has been an options, but I look at kegg/genes/fasta/prokaryotes.pep.gz and think surely that has all the proks, so maybe combine with the euk and virus .pep files (except this doesn't have the kff files... so perhaps that is why concatenated organism .pep files are chosen)?
What does the DRAM team use these days (e.g. for their DRAM2 preps)?
Thanks for the tips,
Caitlin
The text was updated successfully, but these errors were encountered: