Object creation caltech replay #102
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| name: PR validation | |
| on: | |
| pull_request: | |
| types: [synchronize, opened, reopened, edited] | |
| branches: | |
| - master | |
| jobs: | |
| reporting: | |
| runs-on: ubuntu-22.04 | |
| steps: | |
| - name: Report workflow details | |
| run: | | |
| echo "Repository ${{ github.repository }}." | |
| echo "Trigger ref ${{ github.ref }}, base-ref ${{ github.base_ref }}, head_ref ${{ github.head_ref }}." | |
| - name: Check out repository code | |
| uses: actions/checkout@v4 | |
| - name: Report files updated in PR | |
| run: | | |
| git fetch -q origin ${{ github.base_ref }} ${{ github.head_ref }} | |
| git diff --name-only origin/${{ github.base_ref }} origin/${{ github.head_ref }} | |
| test-api: | |
| permissions: | |
| id-token: write # Required for authentication through OIDC to AWS | |
| runs-on: ubuntu-22.04 | |
| steps: | |
| - name: Check out repository code | |
| uses: actions/checkout@v4 | |
| - name: Set up JDK 8 | |
| uses: actions/setup-java@v4 | |
| with: | |
| java-version: '8' | |
| distribution: 'temurin' | |
| - name: Install clojure and clojure cli (clj) | |
| uses: DeLaGuardo/setup-clojure@12.3 | |
| with: | |
| cli: 1.10.1.536 | |
| - name: Report runtime details | |
| run: | | |
| echo "Github runner OS: ${{ runner.os }}" | |
| - name: AWS credentials configuration | |
| uses: aws-actions/configure-aws-credentials@v4 | |
| with: | |
| role-to-assume: ${{secrets.GH_ACTIONS_AWS_ROLE}} | |
| role-session-name: gh-actions-${{github.run_id}}.${{github.run_number}}.${{github.run_attempt}}-test-api | |
| aws-region: us-east-1 | |
| mask-aws-account-id: true | |
| - name: Download and install Datomic Pro | |
| run: | | |
| aws s3 cp s3://wormbase/datomic-pro/distro/datomic-pro-1.0.6165.zip ./ | |
| unzip datomic-pro-1.0.6165.zip | |
| cd datomic-pro-1.0.6165/ | |
| bin/maven-install | |
| - name: Generate pom file | |
| run: | | |
| clojure -Spom | |
| - name: Run Integration tests | |
| run: | | |
| make run-tests APP_PROFILE=dev | |
| build-and-run-container: | |
| permissions: | |
| id-token: write # Required for authentication through OIDC to AWS | |
| runs-on: ubuntu-22.04 | |
| steps: | |
| - name: Check out repository code | |
| uses: actions/checkout@v4 | |
| with: | |
| fetch-depth: 0 | |
| - name: AWS credentials configuration | |
| uses: aws-actions/configure-aws-credentials@v4 | |
| with: | |
| role-to-assume: ${{secrets.GH_ACTIONS_AWS_ROLE}} | |
| role-session-name: gh-actions-${{github.run_id}}.${{github.run_number}}.${{github.run_attempt}}-test-api | |
| aws-region: us-east-1 | |
| mask-aws-account-id: true | |
| - name: Build container image | |
| run: | | |
| make build-docker-image | |
| - name: Launch test instance of container (connecting to test env DB) | |
| run: | | |
| make run-docker PROJ_NAME=wormbase-names-test | |
| sleep 120 | |
| - name: Test API accessability | |
| id: test-api-accessability | |
| continue-on-error: true | |
| run: | | |
| curl --no-progress-meter -I http://localhost:3000/api/auth/identity | |
| - name: Test UI accessability | |
| id: test-ui-accessability | |
| continue-on-error: true | |
| run: | | |
| curl --no-progress-meter -I http://localhost:3000/ | |
| - name: Report container logs if either accessibility test fails | |
| if: ${{ steps.test-ui-accessability.outcome == 'failure' || steps.test-api-accessability.outcome == 'failure' }} | |
| run: | | |
| docker logs wormbase-names-test | |
| - name: Report UI accessibility test failures | |
| if: ${{ steps.test-ui-accessability.outcome == 'failure' }} | |
| run: | | |
| echo "UI accessability test step failed." | |
| - name: Report API accessibility test failures | |
| if: ${{ steps.test-api-accessability.outcome == 'failure' }} | |
| run: | | |
| echo "API accessability test step failed." | |
| - name: Fail if either accessibility test fails | |
| if: ${{ steps.test-ui-accessability.outcome == 'failure' || steps.test-api-accessability.outcome == 'failure' }} | |
| run: | | |
| exit 1 |