Merge pull request #14 from WillFuller/develop

# Merged changes from Upstream Fork

* Increase font size in code blocks

See academicpages#59

* Adds missing semi-colon

* fix font awesome code icon in syntax box

* Fix encoding issue with bib files

* add goodreads to site

* change orcid color

* add medium icon

* add medium profile

* Resolve Google Scholar link not displayed

There was as slight typo in the logic due to which the google scholar link for the respective author's profile set in Config was not being displayed.

* Adding pronouns field to author profile

* Add Google Analytics 4 Support

* fix: Remove deprecated JavaScript to avoid load error from 404 page

* Update files to be ignored

* + webrick to gem file

* academicpages#1902 RM excerpt in pages

* Start updating the README

* academicpages#456 Use real Google Scholar link as an example

* Update issue templates

* RM minimal mistakes changelog

* academicpages#1906

* Edit readme

* + Syntax highlighting example

* Update README.md

* Update README

* Correct syntax

* Streamline config organization for new users

* Add Mastodon to social media

* Closes academicpages#696 with new Kaggle link

* Adjustments to Kaggle link

* Closes academicpages#271 with addition of arXiv

* academicpages#244, academicpages#1600, academicpages#1917 update font awesome to v6, add icons

* Closes academicpages#1911 with update to Academicons

* Closes academicpages#1671 with a new favicon

* academicpages#462 update inline documentation

* academicpages#1041 allow links to wrap

* Closes academicpages#1773 with update to HTML

* Closes academicpages#45 with an update to the CV generator

* academicpages#33, academicpages#1919 Possible missing template fix, bump MathJax to 3.0

* academicpages#1153 add Zhihu

* Closes academicpages#1905 with updates to documentation

* Closes academicpages#693 with updates to documentation and location of citation

* Closes academicpages#820 with updated style

* added missing spanish translations and updated some of the previous ones on ui-text-yml

* Replace `polyfill.io`

* Closes academicpages#1972, update Markdown documentation

* Closes academicpages#1936 with setting to hide RSS feed

* academicpages#1935 clean-up the footer follow a bit

* RM old development override

* Make it clearer where the footnotes are

* academicpages#1975 ignore files created by npm

* Closes academicpages#339 with a fixed masthead

* academicpages#1975 version updates, manage jQuery from npm

* Closes academicpages#1970 with responsive element

* Fix typo

* Closes academicpages#1999

* scroll in sidebar

* scroll in sidebar

* Add scroll to sidebar and adjust media query for screen adaptability

* Closes academicpages#2029 with update to sidebar

* Closes academicpages#1917 with with icon, FA bump to 6.5.2

* Update _config.yml

# Added More Info and blanked out the template filler material.

* added to short left hand bio

* Commented out most of the example publication

* couldn't comment out the link, so changed text from The paper can be downloaded here to test link, and redirected the link to the correct test file

* Comment out 2012-03-01-talk-1.md

* Commented out 2013-03-01-tutorial-1.md

* added some text so that the rest renders blank 2012-03-01-talk-1.md

* Commented out 2014-02-01-talk-2.md

* Comment out 2014-03-01-talk-3.md

* Comment out 2012-08-14-blog-post-1.md

* Update 2012-08-14-blog-post-1.md

* Comment out Update 2199-01-01-future-post.md

* Comment out portfolio-1.md

* Comment out portfolio-2.html

* Commented out pubs and talks for now navigation.yml

* Update cv.md

* Update cv.md

* rename to about about.md

* Update _config.yml

* Rename webpage main title

* Update cv.md

  - figured out how to properly comment out the links to stuff
  - added Scotts email
  - started to begin summary for each job

* Update cv.md

* Update cv.md

* Create 2021-04-20-iop-poster-optimising.md

* Update and rename 2021-04-20-iop-poster-optimising.md to 2021-04-06-iop-poster-optimising.md

* added poster file

* academicpages#2061 Update README with note on dependencies

* Closes academicpages#2055 with adjustment to masthead-height

* Adjust variable name to prevent confusion

* Update casing of template name

* managed to empty out the CV when stuff isn't there

* hidden blogposts for now until I add some more

* added some detail to CV

* added some more intro details for the about page

---------

## Main Repo Credits

_config.yml

@@ -8,7 +8,7 @@
 
 # Site Settings
 locale                   : "en-GB"
-title                    : "William Fuller / Academic Webpage"
+title                    : "William Fuller"
 title_separator          : "-"
 name                     : &name "William Fuller"
 description              : &description "personal description"
@@ -86,7 +86,7 @@ analytics:
 author:
   name             : "Will Fuller"
   avatar           : "profile.jpg"
-  bio              : "Your biography for the left-hand sidebar"
+  bio              : "Experimentalist, Engineer, and Adventurer"
   location         : "Oxford, UK"
   employer         :
   pubmed           : # "https://www.ncbi.nlm.nih.gov/pubmed/?term=john+snow"

_data/navigation.yml

@@ -6,14 +6,14 @@ main:
   - title: "Teaching"
     url: /teaching/  
 
-  - title: "Publications"
-    url: /publications/
+  #- title: "Publications"
+    #url: /publications/
 
-  - title: "Talks"
-    url: /talks/    
+  #- title: "Talks"
+    #url: /talks/    
 
   - title: "CV"
     url: /cv/
 
-  - title: "Blog Posts"
-    url: /year-archive/
+  #- title: "Blog Posts"
+    #url: /year-archive/

_pages/about.md

@@ -1,14 +1,18 @@
 ---
 permalink: /
-title: "William Fuller Academic Webpage"
+title: "William Fuller - About Me"
 excerpt: "About me"
 author_profile: true
 redirect_from: 
   - /about/
   - /about.html
 ---
 
-I am currently finishing off my PhD with the University of Warwick but I'm based at UKAEA's Culham campus working on the MAST-U spherical tokamak. At UKAEA I am currently the assistant Responsible Officer (RO) for the midplane reciprocating probe, which means I get to get hands-on with a tempermental pnumatic driven reciprocation system with changeble heads! This makes operation more complex and chaotic, especially when a new probe head is swapped out. I do my best to understand the system and organise the rat's nest of cables as best I can though!
+I am currently finishing off my PhD with the University of Warwick but I'm based at UKAEA's Culham campus working on the MAST-U spherical tokamak. At UKAEA I am the assistant Responsible Officer (RO) for the midplane reciprocating probe (RP), which means I get to get hands-on with a tempermental pnumatic driven reciprocation system with changeble heads! This makes operation more complex and chaotic, especially when a new probe head is swapped out. I do my best to understand the system and organise the rat's nest of cables as best I can though!
+
+My PhD project is centered around designing a new probe head for the RP system on MAST-U, targeting turbulent measurements in the scrape-off layer (SOL). I designed a probe head named the "Turbulence Probe Head". It has 15 different Langmuir Probes arranged in several multi-functional arrays to capture as much information from the plasma as possible.
+
+I am a former cryogenic test engineer, where I wired, tested, and installed custom cryogenic systems across the globe. These systems were used mostly for materials research and quantum computing. I worked mostly on dry cryostats, where a small amount of Helium gas was liquified and cooled copper stages via conduction in a closed loop. But I also occasionally worked on wet cryostats which use large amounts of liquid Helium, such as dilution fridges, capable of < 5mK temperatures!
 
 ### Source
 ------

_pages/cv.md

@@ -11,32 +11,40 @@ redirect_from:
 
 Education
 ======
+* PhD in Fusion Plasma Physics, The University of Warwick, 2024 (expected)
 * MPhys (Hons) in Physics, The University of Hull, 2016, 2:1
-* Ph.D in Fusion Plasma Physics, The University of Warwick, 2024 (expected)
 
 Work experience
 ======
-* October 2017 - September 2019: Test and Installation Engineer
-  * [ICEoxford](https://www.iceoxford.com/)
-  * Duties included:
-    * cryogenic wiring
-    * testing of wet and dry cryogenic systems
-    * diagnosing, and installing systems internationally
-    * 3-point calibration for temperature sensors used in medical MRI scanners
-  * Supervisor: Gareth Way
-  * Manager: Paul Kelly
 * November 2022 - December 2023: assistant RO for the midplane reciprocating system
   * UKAEA
   * Duties included:
     * Ensure operation of the diagnostic during campaigns
     * Perform maintanence as required
     * Analyse data generated from the diagnostic
     * Swap out probe heads as required by the campaign
-
+  * Supervisor: [Scott Allan](mailto:Scott.Allan@ukaea.uk)
+  <!-- * Summary:
+      io -->
+
+* October 2017 - September 2019: Test and Installation Engineer
+  * [ICEoxford Ltd.](https://www.iceoxford.com/)
+  * Duties included:
+    * Testing of wet and dry cryogenic systems
+    * Testing and training superconducting magnets
+    * Diagnosing, and installing systems internationally
+    * Training users, providing remote support
+    * Cryogenic wiring
+    * 3-point calibration for temperature sensors used in medical MRI scanners
+  * Supervisor: Gareth Way
+  * Manager: Paul Kelly
+  <!-- * Summary:
+      io -->
+
 Skills
 ======
 * Communication
-  * writing academic papers which are consistently highly marked
+  * writing academic reports which are consistently highly marked
   * Effective presentations both academic and society based
   * Contact with customers on installations, training customers on operation and maintenance of a cryostat
   * Cross communication with other departments, managers, and subject matter experts
@@ -50,7 +58,7 @@ Skills
     * Bash
     * Git
     * LaTeX
-    * Python
+    * Python3
     * Microsoft Office
   * Familiar with a range of software packages and programming languages:
     * C
@@ -60,22 +68,28 @@ Skills
     * Origin Pro
 
 [Publications]: #
+
 [======]: #
-  [<ul>{% for post in site.publications %}]: #
-    [{% include archive-single-cv.html %}]: #
-  [{% endfor %}</ul>]: #
+
+  <ul>{% for post in site.publications reversed %}
+    {% include archive-single-cv.html %}
+  {% endfor %}</ul>
 
 [Talks]: #
+
 [======]: #
-  [<ul>{% for post in site.talks %}]: #
-    [{% include archive-single-talk-cv.html %}]: #
-  [{% endfor %}</ul>]: #
+
+  <ul>{% for post in site.talks reversed %}
+    {% include archive-single-talk-cv.html %}
+  {% endfor %}</ul>
+
 
 Posters
 ======
   <ul>{% for post in site.posters reversed %}
     {% include archive-single-cv.html %}
   {% endfor %}</ul>
+
 
 Talks
 ======
@@ -90,5 +104,7 @@ Teaching
   {% endfor %}</ul>
 
 [Service and leadership]: #
+
 [======]: #
+
 [* Currently signed in to 43 different slack teams]: #

_portfolio/portfolio-1.md

@@ -1,7 +1,11 @@
----
-title: "Portfolio item number 1"
-excerpt: "Short description of portfolio item number 1<br/><img src='/images/500x300.png'>"
-collection: portfolio
----
+[---]: #
 
-This is an item in your portfolio. It can be have images or nice text. If you name the file .md, it will be parsed as markdown. If you name the file .html, it will be parsed as HTML. 
+[title: "Portfolio item number 1"]: #
+
+[excerpt: "Short description of portfolio item number 1<br/><img src='/images/500x300.png'>"]: #
+
+[collection: portfolio]: #
+
+[---]: #
+
+[This is an item in your portfolio. It can be have images or nice text. If you name the file .md, it will be parsed as markdown. If you name the file .html, it will be parsed as HTML. ]: #

_portfolio/portfolio-2.html

@@ -1,7 +1,7 @@
----
-title: "Portfolio item number 2"
-excerpt: "Short description of portfolio item number 2 <br/><img src='/images/500x300.png'>"
-collection: portfolio
----
+<!-- --- -->
+<!-- title: "Portfolio item number 2" -->
+<!-- excerpt: "Short description of portfolio item number 2 <br/><img src='/images/500x300.png'>" -->
+<!-- collection: portfolio -->
+<!-- --- -->
 
-This is an item in your portfolio. It can be have images or nice text. If you name the file .md, it will be parsed as markdown. If you name the file .html, it will be parsed as HTML. 
+<!-- This is an item in your portfolio. It can be have images or nice text. If you name the file .md, it will be parsed as markdown. If you name the file .html, it will be parsed as HTML. -->

_posters/2021-04-06-iop-poster-optimising.md

@@ -0,0 +1,16 @@
+---
+title: "Optimising the Design of a New Turbulence Probe for MAST-U."
+collection: posters
+type: "Poster"
+permalink: /posters/2021-04-06-iop-poster-optimising
+venue: "IOP 47th Plasma Physics Conference 2021"
+date: 2021-04-06
+location: "Online"
+paperurl: 'https://willfuller.github.io/files/2021_iop_poster.pdf'
+---
+
+### Poster Description
+
+This poster describes some of the synthetic using a stochastic model for filament dynamics I undertook to aid in the design of an array of Langmuir Probes targeting filament velocity distribution measurements in the Scrape-Off Layer (SOL). [Interactive poster](https://plasma2021-iop.ipostersessions.com/Default.aspx?s=F9-04-28-C9-07-D3-6B-02-1A-7A-3F-E5-7C-88-12-7D).
+
+I was jointly awarded the best poster prize.

_posts/2012-08-14-blog-post-1.md

@@ -1,20 +1,32 @@
----
-title: 'Blog Post number 1'
-date: 2012-08-14
-permalink: /posts/2012/08/blog-post-1/
-tags:
-  - cool posts
-  - category1
-  - category2
----
-
-This is a sample blog post. Lorem ipsum I can't remember the rest of lorem ipsum and don't have an internet connection right now. Testing testing testing this blog post. Blog posts are cool.
-
-Headings are cool
-======
-
-You can have many headings
-======
-
-Aren't headings cool?
-------
+[---]: #
+
+[title: 'Blog Post number 1']: #
+
+[date: 2012-08-14]: #
+
+[permalink: /posts/2012/08/blog-post-1/]: #
+
+[tags:]: #
+
+  [- cool posts]: #
+
+  [- category1]: #
+
+  [- category2]: #
+
+[---]: #
+
+
+[This is a sample blog post. Lorem ipsum I can't remember the rest of lorem ipsum and don't have an internet connection right now. Testing testing testing this blog post. Blog posts are cool.]: #
+
+[Headings are cool]: #
+
+[======]: #
+
+[You can have many headings]: #
+
+[======]: #
+
+[Aren't headings cool?]: #
+
+[------]: #

_posts/2199-01-01-future-post.md

@@ -1,11 +1,19 @@
----
-title: 'Future Blog Post'
-date: 2199-01-01
-permalink: /posts/2012/08/blog-post-4/
-tags:
-  - cool posts
-  - category1
-  - category2
----
-
-This post will show up by default. To disable scheduling of future posts, edit `config.yml` and set `future: false`. 
+[---]: #
+
+[title: 'Future Blog Post']: #
+
+[date: 2199-01-01]: #
+
+[permalink: /posts/2012/08/blog-post-4/]: #
+
+[tags:]: #
+
+  [- cool posts]: #
+
+  [- category1]: #
+
+  [- category2]: #
+
+[---]: #
+
+[This post will show up by default. To disable scheduling of future posts, edit `config.yml` and set `future: false`. ]: #

_publications/2009-10-01-paper-title-number-1.md

@@ -1,12 +1,26 @@
----
-title: "Paper Title Number 1"
-collection: publications
-permalink: /publication/2009-10-01-paper-title-number-1
-excerpt: 'This paper is about the number 1. The number 2 is left for future work.'
-date: 2009-10-01
-venue: 'Journal 1'
-paperurl: 'http://academicpages.github.io/files/paper1.pdf'
-citation: 'Your Name, You. (2009). &quot;Paper Title Number 1.&quot; <i>Journal 1</i>. 1(1).'
----
-
-The contents above will be part of a list of publications, if the user clicks the link for the publication than the contents of section will be rendered as a full page, allowing you to provide more information about the paper for the reader. When publications are displayed as a single page, the contents of the above "citation" field will automatically be included below this section in a smaller font.
+[---]: #
+
+[title: "Paper Title Number 1"]: #
+
+[collection: publications]: #
+
+[permalink: /publication/2009-10-01-paper-title-number-1]: #
+
+[excerpt: 'This paper is about the number 1. The number 2 is left for future work.']: #
+
+[date: 2009-10-01]: #
+
+[venue: 'Journal 1']: #
+
+[paperurl: 'http://academicpages.github.io/files/paper1.pdf']: #
+
+[citation: 'Your Name, You. (2009). &quot;Paper Title Number 1.&quot; <i>Journal 1</i>. 1(1).']: #
+
+[---]: #
+
+[This paper is about the number 1. The number 2 is left for future work.]: #
+
+[Test link](http://willfuller.github.io/files/paper1.pdf)
+
+
+[Recommended citation: Your Name, You. (2009). "Paper Title Number 1." <i>Journal 1</i>. 1(1).]: #

_publications/2024-02-17-paper-title-number-4.md

@@ -1,12 +1,12 @@
----
-title: "Paper Title Number 4"
-collection: publications
-permalink: /publication/2024-02-17-paper-title-number-4
-excerpt: 'This paper is about fixing template issue #693.'
-date: 2024-02-17
-venue: 'GitHub Journal of Bugs'
-paperurl: 'http://academicpages.github.io/files/paper3.pdf'
-citation: 'Your Name, You. (2024). &quot;Paper Title Number 3.&quot; <i>GitHub Journal of Bugs</i>. 1(3).'
----
+[---]: #
+[title: "Paper Title Number 4"]: #
+[collection: publications]: #
+[permalink: /publication/2024-02-17-paper-title-number-4]: #
+[excerpt: 'This paper is about fixing template issue #693.']: #
+[date: 2024-02-17]: #
+[venue: 'GitHub Journal of Bugs']: #
+[paperurl: 'http://academicpages.github.io/files/paper3.pdf']: #
+[citation: 'Your Name, You. (2024). &quot;Paper Title Number 3.&quot; <i>GitHub Journal of Bugs</i>. 1(3).']: #
+[---]: #
 
-The contents above will be part of a list of publications, if the user clicks the link for the publication than the contents of section will be rendered as a full page, allowing you to provide more information about the paper for the reader. When publications are displayed as a single page, the contents of the above "citation" field will automatically be included below this section in a smaller font.
+[The contents above will be part of a list of publications, if the user clicks the link for the publication than the contents of section will be rendered as a full page, allowing you to provide more information about the paper for the reader. When publications are displayed as a single page, the contents of the above "citation" field will automatically be included below this section in a smaller font.]: #

_talks/2012-03-01-talk-1.md

@@ -1,11 +1,21 @@
----
-title: "Talk 1 on Relevant Topic in Your Field"
-collection: talks
-type: "Talk"
-permalink: /talks/2012-03-01-talk-1
-venue: "UC San Francisco, Department of Testing"
-date: 2012-03-01
-location: "San Francisco, California"
----
-
-This is a description of your talk, which is a markdown files that can be all markdown-ified like any other post. Yay markdown!
+[---]: #
+
+[title: "Talk 1 on Relevant Topic in Your Field"]: #
+
+[collection: talks]: #
+
+[type: "Talk"]: #
+
+[permalink: /talks/2012-03-01-talk-1]: #
+
+[venue: "UC San Francisco, Department of Testing"]: #
+
+[date: 2012-03-01]: #
+
+[location: "San Francisco, California"]: #
+
+[---]: #
+
+test post
+
+[This is a description of your talk, which is a markdown files that can be all markdown-ified like any other post. Yay markdown!]: #