Removes stale chart files and upgrades remaining d3 dependencies. #7132
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What this PR does
Supersedes #7121
The d3 upgrades should fix GHSA-36jr-mh4h-2g58, GHSA-36jr-mh4h-2g58.
Test me
Checklist
doc/
.[ ] I've updated CHANGES.md with what I changed.There are a few of these dependency upgrade PRs, I'll add a single line for all of them before we do a next release.