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LipidLynxX version 0.9.24 for ELM2020

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@ZhixuNi ZhixuNi released this 01 Oct 15:48
· 2 commits to master since this release
v0.9.24
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Description

After intensive development, the LipidLynxX is switched to FastAPI based web oriented package and finally first phase of the Linker module.

LipidLynxX_Start_Firefox

!For test use only, not for production!
Please send use feedback to help us improve our software, thanks!

Main Modules

  • LipidLynxX Converter

    • Convert different abbreviations to uniformed LipidLynxX ID

  • LipidLynxX Equalizer

    • Cross compare different level of LipidLynxX ID on selected level

  • LipidLynxX Linker

    • Link lipid abbreviations to available resources

Key Features

  • Optimized for manual interpretation and computer processing
  • Suitable for both unmodified lipids and modified lipids
  • Unified modification controlled vocabularies
  • Unified position specific annotations
  • Cross level match based on shared levels
  • Extract key information from LipidLynxX ID
  • Strictly controlled format using JSON schema
  • Easy to use Graphic User Interface
  • API access for professional users
  • Command line tools for professional users

Install

For general Windows users:

  • Download LipidLynxX_v0-9-24.zip ~125MB
  • Unzip it to a folder
  • Find the LipidLynxX.exe and double click
  • LipidLynxX backend will pop-up a webpage in your default web browser e.g. Chrome, and a command line window for debug information.
  • Please allow LipidLynxX to pass firewall for the Linker module to access databases
  • Just close the command line debug window to quit LipidLynxX
  • Due to limitations of packaging, please run max 3 tasks at the same time.
  • Known issues: if Linker runs more than 300s or more than 30s/per ID, please restart LipidLynxX and try again.

For developers:

  • Please use python 3.8.5 and run from source code.
  • Recommend to use "pip install -r requirements.txt" in an virtual env to install the dependencies
  • run python LipidLynxX.py to start.
  • please check lib\lynx\config.ini for more settings of ports and max clients/workers

Type of change

  • Bug fix (non-breaking change which fixes an issue)
  • New feature (non-breaking change which adds functionality)
  • Breaking change (fix or feature that would cause existing functionality to not work as expected)
  • This change requires a documentation update

LipidLynxX Linker in v0.9.24

LipidLynxX-Linker

Assets 3