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36 Open 51 Closed
36 Open 51 Closed
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Issues list

Address already in use bug slurm
#91 opened Apr 4, 2024 by arteymix
2
Metadata in Prefetch tasks should use a GSM ID, not a SRX ID. bug
#90 opened Apr 4, 2024 by arteymix
Reorganize high-level scripts into a rnaseq-pipeline-cli tool enhancement
#89 opened Oct 18, 2023 by arteymix
Produce an error when fastq files are empty
#88 opened Oct 18, 2023 by arteymix
Remove --clip and --skip-technical from fastq-dump
#87 opened Oct 17, 2023 by arteymix
Include the webviewer tests on the CI
#86 opened Oct 17, 2023 by arteymix
Report errors on the Slack channel
#85 opened Sep 25, 2023 by arteymix
Use of uninitialized value $doesOpen in numeric eq (==) at contrib/RSEM/rsem-calculate-expression line 574 bug
#84 opened Aug 28, 2023 by arteymix
Unfulfilled dependency at runtime for SubmitExperimentBatchInfo bug gemma Features/Bug related to Gemma integration
#76 opened Aug 5, 2022 by arteymix 2.1.12
1
Killed external tasks leave an empty error message
#67 opened Nov 10, 2021 by arteymix
Batch information that has been deemed unuseable are not considered completed
#64 opened Sep 11, 2021 by arteymix
Add a task to generate a summary of the tools, software and references used
#63 opened Aug 29, 2021 by arteymix 2.2.0
@arteymix
Use luigi.TaskParameter for platforms and sources-specific tasks enhancement
#62 opened Aug 16, 2021 by arteymix
Trimmed FASTQs are not deleted when data is successfully submitted to Gemma bug
#59 opened Jul 28, 2021 by arteymix
@arteymix
Build and install the shared memory cleanup tool during initial setup
#58 opened Jun 25, 2021 by arteymix
Batch information for split experiments
#56 opened Mar 8, 2021 by sanjarogic
Adjust FastQC limits to be suitable for RNA-Seq
#54 opened Feb 1, 2021 by arteymix
Add BGI-SEQ adapters to the FastQC report
#53 opened Feb 1, 2021 by arteymix
Add support for Ion Torrent Proton platform
#52 opened Jan 26, 2021 by arteymix
Add automated quality control checks before submitting data to Gemma enhancement
#51 opened Jan 15, 2021 by arteymix
5 tasks
@arteymix
Adapt the Web viewer for other data sources enhancement
#49 opened Sep 7, 2020 by arteymix
Add cutadapt section to MultiQC report
#47 opened Jul 10, 2020 by arteymix
1
Only consider the relevant subset of samples when assessing batch info enhancement
#46 opened Jun 18, 2020 by arteymix
Support extracting batch information from FASTQ headers with underscores enhancement
#43 opened Mar 14, 2020 by arteymix
Upload pipeline metadata to Gemma enhancement gemma Features/Bug related to Gemma integration
#41 opened Mar 2, 2020 by arteymix
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