1.0.1

New Features

General

• Limited taxa buttons in side panel to improve performance in data sets
  with a large number of taxa (> 1000).

Process

• Added support for non-contiguous partition files in RAXML format.
• Added support for reverse concatenation of multiple non-contiguous partitions
  without the need to specify the whole alignment in the partitions.

Statistics

• Added character (nucleotide/residue) proportion for single genes plot.
  This new plot can be viewed in absolute counts or proportion character
  proportion.
• Added gene conservation plot for single genes.

Improvements

General

• Taxa information popup from the side panel are now dynamically fetched
  and should be noticeable faster for large data sets.
• Added version option to all CLI interfaces via the "-v" or "--version"
  options.

Orthology

• Improved handling and sanity checking of input and output directories
  for orthomcl_pipeline CLI interface.

Statistics

• Automatic calculation of summary statistics has been disabled for
  data sets with a large number of taxa (> 1000). Calculation of summary
  statistics can still be triggered manually.

Bug Fixes

Orthology

• Fixed orthomcl_pipeline error when the input proteomes where not
  properly sanitized (i.e., contain whitespace).
• Fixed issue where ortholog sequences were incorrectly retrieved from database
  under some circunstances.

Statistics

• Fixed crash on stacked barplots due to deprecated vega colormaps.
• Fixed crash on sliding window plot for pairwise sequence similarity and
  segregating sites due to matplotlib update.