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Pinned

  1. open2c/cooler open2c/cooler Public

    A cool place to store your Hi-C

    Python 191 53

  2. open2c/pairtools open2c/pairtools Public

    flexible suite of CLI tools for contact extraction (.pairs) from sequencing data (Hi-C, Micro-C and other chromosome capture methods)

    Python 90 34

  3. smithlabcode/preseq smithlabcode/preseq Public

    Software for predicting library complexity and genome coverage in high-throughput sequencing.

    C++ 74 15

  4. SAMtoBAM/MUMandCo SAMtoBAM/MUMandCo Public

    MUM&Co is a simple bash script that uses Whole Genome Alignment information provided by MUMmer (only v4) to detect Structural Variation

    Shell 59 14

  5. higlass/higlass-python higlass/higlass-python Public

    Python bindings to and Jupyter Notebook+Lab integration for the HiGlass viewer

    Python 49 11