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@Mouse-Imaging-Centre

Mouse Imaging Centre, Hospital for Sick Children, Toronto Canada

README.md

Mouse-Imaging-Centre GitHub

This GitHub organization is the canonical public location for our software.

Download an Apptainer/Singularity container containing our software toolchain from cloud.sylabs.io or build it from source from our mice-apptainer repository.

The Dorr 2008 mouse brain atlas is available for download (or clone via datalad-osf) from osf.io.

Pinned

  1. pydpiper pydpiper Public

    Python code for flexible pipeline control

    Python 24 10

  2. RMINC RMINC Public

    Statistics for MINC volumes: A library to integrate voxel-based statistics for MINC volumes into the R environment. Supports getting and writing of MINC volumes, running voxel-wise linear models, c…

    R 22 17

  3. summer_school2017 summer_school2017 Public

    Mouse Imaging Summer School 2017

    HTML 1 1

  4. mice-apptainer mice-apptainer Public

    Singularity container definition for MICe/Oxford neuroimaging software

Repositories

Showing 10 of 38 repositories
  • RMINC Public

    Statistics for MINC volumes: A library to integrate voxel-based statistics for MINC volumes into the R environment. Supports getting and writing of MINC volumes, running voxel-wise linear models, correlations, etc.; correcting for multiple comparisons using the False Discovery Rate, and more. With contributions from Jason Lerch, Chris Hammill, J…

    R 22 17 97 2 Updated May 13, 2024
  • mice-apptainer Public

    Singularity container definition for MICe/Oxford neuroimaging software

    0 0 4 0 Updated Oct 6, 2022
  • minclaplace Public

    Laplace's equation for measuring thickness (or other uses of streamlines) between two boundaries

    Cython 8 5 3 0 Updated Oct 6, 2022
  • mice-spack-packages Public

    Spack packages of MICe software (and some external dependencies)

    Python 0 MIT 0 0 0 Updated Oct 5, 2022
  • pydpiper Public

    Python code for flexible pipeline control

    Python 24 10 151 0 Updated Sep 29, 2022
  • .github Public

    Canonical repository for organization-wide README.md.

    0 0 0 0 Updated Sep 29, 2022
  • pyminc Public

    A python interface to the MINC 2 library, allowing use of numpy arrays to access MINC data, and other such similar goodies, developed by Jason Lerch

    Python 13 8 19 1 Updated Sep 26, 2022
  • RMINC-test-data Public

    Data files for running RMINC tests

    0 BSD-3-Clause 1 0 0 Updated Sep 9, 2022
  • minc-stuffs Public

    Scripts and bits of code for minc files.

    Python 6 5 25 1 Updated Apr 27, 2022
  • minc-toolkit-v2 Public Forked from BIC-MNI/minc-toolkit-v2

    Version 2 of the minc-toolkit, uses tools based on ITK version 4.x

    CMake 0 GPL-3.0 21 0 0 Updated Apr 25, 2022
View all repositories

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