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18 Open 79 Closed
18 Open 79 Closed
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Issues list

README 2.0 enhancement New feature or request good first issue Good for newcomers help wanted Extra attention is needed invalid This doesn't seem right wontfix This will not be worked on
#137 opened Apr 6, 2024 by MatthewRalston Interface Revision
@MatthewRalston
2
Kmer.shred always returns sparse kmer_id/count array documentation Improvements or additions to documentation
#134 opened Apr 4, 2024 by MatthewRalston V0.7 stable?
@MatthewRalston
2
vsearch conda package dependencies Pull requests that update a dependency file documentation Improvements or additions to documentation enhancement New feature or request
#131 opened Mar 29, 2024 by MatthewRalston edge list tuple
@MatthewRalston
Expanded row metadata for graph format dependencies Pull requests that update a dependency file documentation Improvements or additions to documentation duplicate This issue or pull request already exists enhancement New feature or request good first issue Good for newcomers invalid This doesn't seem right
#130 opened Mar 29, 2024 by MatthewRalston V0.7 stable?
2
still no dl bug Something isn't working duplicate This issue or pull request already exists help wanted Extra attention is needed invalid This doesn't seem right
#125 opened Mar 7, 2024 by MatthewRalston edge list tuple
@MatthewRalston
3
Assert subsequent shredded kmers are neighborly, skip if fails (fastq centered) bug Something isn't working dependencies Pull requests that update a dependency file documentation Improvements or additions to documentation duplicate This issue or pull request already exists enhancement New feature or request good first issue Good for newcomers question Further information is requested
#123 opened Mar 5, 2024 by MatthewRalston
1
@MatthewRalston
7
Graph algorithms documentation Improvements or additions to documentation enhancement New feature or request help wanted Extra attention is needed
#122 opened Feb 20, 2024 by MatthewRalston edge list tuple
@MatthewRalston
3
__init__.py --all-metadata has print statement when not --quiet doesn print to stderr the metadata for debugging. bug Something isn't working invalid This doesn't seem right question Further information is requested wontfix This will not be worked on
#118 opened Feb 3, 2024 by MatthewRalston V0.7 stable?
@MatthewRalston
__init__.py has duplicate storage of kmerid [smell] bug Something isn't working enhancement New feature or request good first issue Good for newcomers invalid This doesn't seem right wontfix This will not be worked on
#114 opened Feb 3, 2024 by MatthewRalston V0.7 stable?
@MatthewRalston
kmerdb profile sort order returns improperly sorted col2, col3 bug Something isn't working good first issue Good for newcomers invalid This doesn't seem right
#113 opened Feb 3, 2024 by MatthewRalston V0.7 stable?
@MatthewRalston
twizza project template
#112 opened Jul 13, 2023 by MatthewRalston
Fixing documentation bug Something isn't working documentation Improvements or additions to documentation invalid This doesn't seem right
#102 opened Dec 28, 2022 by MatthewRalston v0.7.2 stable, PyPI downloads
@MatthewRalston
Not ready for dls enhancement New feature or request good first issue Good for newcomers help wanted Extra attention is needed invalid This doesn't seem right question Further information is requested wontfix This will not be worked on
#101 opened Dec 28, 2022 by MatthewRalston V0.7 stable?
@MatthewRalston
No module named kmerdb in the bin script from pyproject.toml's entry_point. bug Something isn't working dependencies Pull requests that update a dependency file documentation Improvements or additions to documentation good first issue Good for newcomers help wanted Extra attention is needed invalid This doesn't seem right
#97 opened Dec 27, 2022 by MatthewRalston v0.7.2 stable, PyPI downloads
@MatthewRalston
5
Maximum choice of k wrt NumPy array limitations
#96 opened Dec 6, 2022 by MatthewRalston
Larger look into the uint64 space, choosing the best k for my machine bug Something isn't working documentation Improvements or additions to documentation enhancement New feature or request good first issue Good for newcomers help wanted Extra attention is needed invalid This doesn't seem right
#67 opened Jan 19, 2022 by MatthewRalston Replace PostgreSQL counter to in-memory
@MatthewRalston
7
Submit your edits for this evening by 11:30. documentation Improvements or additions to documentation help wanted Extra attention is needed invalid This doesn't seem right
#24 opened Jan 15, 2021 by MatthewRalston
2 tasks
@MatthewRalston
1
Probability needs a k-mer total column (N-k+1) and a unique k-mer count bug Something isn't working
#21 opened Jan 14, 2021 by MatthewRalston
@MatthewRalston
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