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19 Open 28 Closed
19 Open 28 Closed
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Issues list

Error when no spots detected bug Something isn't working
#49 opened Feb 27, 2024 by krokicki
Run Bigstream2 in Pipeline bug Something isn't working
#48 opened Jan 21, 2024 by anaste123
1
"RuntimeError: ConnectionPool is closed" when registration bug Something isn't working
#47 opened Nov 27, 2023 by azzhu
@cgoina
Spot extraction error when running pipeline with "lsf" profile bug Something isn't working
#46 opened Oct 2, 2023 by cgoina
@cgoina
Make RS-FISH default enhancement New feature or request
#45 opened Sep 27, 2023 by krokicki
2
Run "warp_spots" only produced nothing bug Something isn't working
#44 opened Jul 17, 2023 by FangmingXie
1
Error stitching large sample bug Something isn't working
#43 opened Jun 28, 2023 by FangmingXie
3
Skip steps within Stitching enhancement New feature or request
#42 opened Jun 26, 2023 by FangmingXie
4
Generate MVL from CZI if missing enhancement New feature or request
#41 opened Jun 2, 2023 by krokicki
@cgoina
1
Add distributed CellPose segmentation enhancement New feature or request
#39 opened Jun 1, 2023 by krokicki
@cgoina
Integrate BigStream2 enhancement New feature or request
#38 opened Jun 1, 2023 by krokicki
@cgoina
4
Other data formats as input. enhancement New feature or request
#25 opened Feb 14, 2023 by kenjp1223
@cgoina
1
Add RS-FISH parameters for multiple channels enhancement New feature or request
#20 opened Jul 20, 2022 by neugun
@cgoina
3
Automatically adjust segmentation model dir enhancement New feature or request
#16 opened Mar 23, 2022 by krokicki
Add segmentation_channels enhancement New feature or request
#15 opened Mar 22, 2022 by krokicki
adding ROI and spot extraction in the pipeline enhancement New feature or request
#13 opened Mar 21, 2022 by limingtan
@cgoina
Delete shared_data_dir contents after publish enhancement New feature or request
#12 opened Mar 2, 2022 by krokicki
@krokicki
Feature request: add standalone pipeline for segmentation enhancement New feature or request
#8 opened Feb 4, 2022 by KMSmichelle
5
Support for dax file input format enhancement New feature or request
#7 opened Jan 20, 2022 by pranathivemuri
3
ProTip! Adding no:label will show everything without a label.