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COSgen

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COSgen (Contrast optimized stimulus generator) is a Python package for the optimization of stimulus sequences in stimulus evoked fMRI experiments. It is fully compatible with the stimulus sequence delivery solution COSplay.

Features

  • Highly adaptable for specific use cases
  • Allows full model (design matrix construction, convarinace matrix compution) specification
  • Allows custom fitness measure specification
  • Extensive API Documentation
  • Fully compatible with a pure Micro/Python stimulus delivery solution (COSplay)

Installation

COSgen can be installed using Python's setuptools.

git clone https://github.com/IBT-FMI/COSgen.git
cd COSgen
python setup.py install --user

Note: setuptools will not manage any dependencies. You will have to install Dependencies manually, e.g. using pip install argh.

Dependencies