Skip to content
@HiPCTProject

HiP-CT Project

Code associated with hierarchical phase contrast tomography

HiP-CT Project

This organisation contains codes used internally within the HiP-CT project.

Where possible we've made these codes public so others can read and re-use. None of the code is designed to be general purpose or scientist-facing.

For public-facing codes for working with HiP-CT data in the Human Organ Atlas, see https://github.com/HumanOrganAtlas.

Popular repositories

  1. Tomo_Recon Tomo_Recon Public archive

    MATLAB 6

  2. stack-to-chunk stack-to-chunk Public

    Convert stacks of images to chunked datasets

    Python 3 1

  3. rebin rebin Public

    Re-bin stacks of JPEG2000 images to reduce their filesize and resolution

    Python

  4. downsample-jp2s downsample-jp2s Public

    Script to create binned JPEG2000 datasets for HiP-CT data

    Python

  5. contrast-lims contrast-lims Public

    Script for calculating contrast limits for HiP-CT datasets

    Python

  6. hipct-reg hipct-reg Public

    Code to register regions of interest to full organ datasets

    Python

Repositories

Showing 8 of 8 repositories
  • hipct-reg Public

    Code to register regions of interest to full organ datasets

    Python 0 BSD-3-Clause 0 2 0 Updated May 30, 2024
  • stack-to-chunk Public

    Convert stacks of images to chunked datasets

    Python 3 BSD-3-Clause 1 0 4 Updated May 27, 2024
  • rebin Public

    Re-bin stacks of JPEG2000 images to reduce their filesize and resolution

    Python 0 BSD-3-Clause 0 1 1 Updated May 27, 2024
  • .github Public
    0 0 0 0 Updated May 21, 2024
  • contrast-lims Public

    Script for calculating contrast limits for HiP-CT datasets

    Python 0 BSD-2-Clause 0 1 0 Updated May 13, 2024
  • downsample-jp2s Public

    Script to create binned JPEG2000 datasets for HiP-CT data

    Python 0 BSD-3-Clause 0 2 0 Updated Apr 19, 2024
  • data-speeds Public

    Comparing image file I/O

    Python 0 0 0 0 Updated Apr 6, 2024
  • Tomo_Recon Public archive
    MATLAB 6 GPL-3.0 0 0 0 Updated Jul 6, 2023

Top languages

Loading…

Most used topics

Loading…