Publications

• Automatic multi-weigh-station for assessing sheep liveweight in small flocks Bates et al. 2023
• The slow-phase of chlorophyll fluorescence induction curve reflects the electron transport rates of Photosystem II in vivo in Chlorella vulgaris - Bates et al. 2022
• Real-Time Environmental Monitoring for Aquaculture Using a LoRaWAN-Based IoT Sensor Network - Bates et al. 2021
• The Phenobottle, an open-source photobioreactor platform for environmental simulation - Bates et al. 2020
• A guide to Open-JIP, a low-cost open-source chlorophyll fluorometer - Bates et al. 2019
• Phenomics: conceptualization and importance for plant physiology Zavafer et al. 2023
• Normalized chlorophyll fluorescence imaging: A method to determine irradiance and photosynthetically active radiation in phytoplankton cultures - Zavafer et al. 2021

Open-Source Projects

Personal

Firmware / Electronics

• controllino-can: Controllino CANbus interface.
• u-nit: High-power STM32 based development board.
• esp32-clover: ESP32 development board.
• arduino-clap: Arduino command line argument parser (CLAP).
• ESP32-SDI12: ESP32 SDI-12 protocol interface.
• Open-JIP: Open-source chlorophyll fluorometer.
• Phenobottle: Open-source photobioreactor for microalgae.
• STM32-SDI12: STM32 SDI-12 protocol interface.
• STM32-MCP9808: STM32 MCP9808 I₂C interface.
• PAR-Meter: Open-source PAR meter.

Software

• himawari-dl: Download high-resolution images from the Japanese geostationary satellite, Himawari.
• portstream: Minimal serial port streaming for unix systems.
• lmic-wrapper: Arduino-LMIC LoRaWAN communications setup and handler.
• kandle: KiCAD 3rd-party component handler.
• kicad-rename-zsh: Rename KiCAD projects.
• jupy-geospatial: Geospatial jupyter environment dockerized.
• AOC-soutions: Advent of code solutions.
• random: Test scripts for everything.

Professional

Firmware / Electronics

• environmental-node: CAT-M1 node for environmental research.
• sheep-weighstation: Remote LoRaWAN weigh-station for assessing sheep live-weight.
• bLE-oyster: Bluetooth Low Energy (bLE), oyster simulator for temperature monitoring.

Software

• oyster-closure-prediction: Oyster harvest area closure prediction.
• pilot-reports: Automated PDF and web generated environmental reports.
• IoT-interpolation: 3D interpolation for spatially distributed IoT devices.

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