build: update dependencies lock file

  • Removing contextlib2 (21.6.0)
  • Updating exceptiongroup (1.2.0 -> 1.2.1)
  • Updating idna (3.6 -> 3.7)
  • Updating pyparsing (3.1.1 -> 3.1.2)
  • Updating sniffio (1.3.0 -> 1.3.1)
  • Updating typing-extensions (4.9.0 -> 4.11.0)
  • Updating anyio (4.2.0 -> 4.3.0)
  • Updating filelock (3.13.1 -> 3.14.0)
  • Updating joblib (1.3.2 -> 1.4.2)
  • Updating packaging (23.2 -> 24.0)
  • Updating platformdirs (4.2.0 -> 4.2.1)
  • Updating pluggy (1.4.0 -> 1.5.0)
  • Updating pycparser (2.21 -> 2.22)
  • Updating pydantic-core (2.16.2 -> 2.18.2)
  • Updating scipy (1.12.0 -> 1.13.0)
  • Updating setuptools (69.0.3 -> 69.5.1)
  • Updating threadpoolctl (3.2.0 -> 3.5.0)
  • Updating coverage (7.4.1 -> 7.5.1)
  • Updating fiona (1.9.5 -> 1.9.6)
  • Updating identify (2.5.33 -> 2.5.36)
  • Updating jinja2 (3.1.3 -> 3.1.4)
  • Updating pydantic (2.6.1 -> 2.7.1)
  • Updating rasterio (1.3.9 -> 1.3.10)
  • Updating shapely (2.0.2 -> 2.0.4)
  • Updating tenacity (8.2.3 -> 8.3.0)
  • Updating urllib3 (2.2.0 -> 2.2.1)
  • Updating virtualenv (20.25.0 -> 20.26.1)
  • Updating plotly (5.18.0 -> 5.22.0)
  • Updating pre-commit (3.6.0 -> 3.7.0)
  • Updating pytest-mock (3.12.0 -> 3.14.0)
  • Updating python-dateutil (2.8.2 -> 2.9.0.post0)
  • Updating rpy2 (3.5.15 -> 3.5.16)
  • Updating schema (0.7.5 -> 0.7.7)

Closes #779
Closes #782