Adding new environments analysis, an experiment file, and a test #205
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…ude in counts calculations
…ude in counts calculations
… to have more accurate stoichiometry.
…into metabolism-redux
…mport of environments
…compound is the reactant
…ude in counts calculations
…ude in counts calculations
… to have more accurate stoichiometry.
…compound is the reactant
…onments # Conflicts: # ecoli/processes/metabolism_redux.py # notebooks/new_environments/Fe_S_pathway.ipynb # notebooks/new_environments/new_genes.xlsx
…onments # Conflicts: # ecoli/experiments/metabolism_redux_sim.py
…es and its lower order connections
…ged reactions + support for specific metabolites of interest in the same script
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Now that the ParCa has been integrated into the vivarium repo along with some new models from the wcEcoli repo, there's been a lot of changes to the repo since you started your summer project! Most of them will make our lives easier, but we'll probably have to do a slight restart of this PR. I didn't want you to clean up your PR twice, so I waited until I could make things work properly before dropping this comment, haha. [Updating this comment with more info in the afternoon] |
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What you'll want to do to merge with the new changes in the easiest way possible:
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Also updated some tests for testing cell growth and division for the new metabolism process.