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A thesis project conducted in 2023/2024 at Pluskal lab, IOCB Prague. The project aimed to perform a bioinformatics analysis of characterized terpene synthases and mine putative terpene synthases from large-scale repositories.

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TPS mining project

A thesis project conducted in 2023/2024 at Pluskal lab, IOCB Prague. The project aimed to perform a bioinformatics analysis of characterized terpene synthases and mine putative terpene synthases from large-scale repositories.

Project organisation

The project is organized into three directories corresponding to different parts of the thesis:

  • 01_tps_db_analysis - analysis of characterized terpene synthases
  • 02_mining - mining of putative terpene synthases
  • 03_mining_analysis - analysis of the mining results

Each directory contains a README.md with overview of the directory, and a Snakefile pipeline for file processing and creation.

The analysis directories also include notebooks directory containing various analysis notebooks.

Conda and pip

conda and python packages that were used can be found in packages.txt.

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A thesis project conducted in 2023/2024 at Pluskal lab, IOCB Prague. The project aimed to perform a bioinformatics analysis of characterized terpene synthases and mine putative terpene synthases from large-scale repositories.

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