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@Cai-Lab-at-University-of-Michigan

Cai Lab at University of Michigan

The Cai Laboratory develops and uses interdisciplinary techniques to study the development and fine tuning of neural circuits in the mouse brain.

Pinned

  1. nTracer nTracer Public

    Rolling release code for the nTracer ImageJ/Fiji plugin, as published in: Roossien DH, et. al, Bioinformatics 2019.

    Java 5

  2. MiCV MiCV Public

    MiCV is a python dash-based web-application that enables researchers to upload raw scRNA-seq data and perform filtering, analysis, and manual annotation.

    CSS 6

  3. nGauge nGauge Public

    A Python library which provides a collection of tools for the measurement, quantification, and visualization of neuron morphology.

    Jupyter Notebook 5 1

  4. TraceMontage TraceMontage Public

    A ImageJ/Fiji plugin for the merging of multiple neuron traces between two images, as published in: Dizaji SA, Walker L, and Cai D, Journal of Neuroscience Methods 2019.

    Java 2

  5. public_tracing_datasets public_tracing_datasets Public

    Publicly-released neuron tracing datasets from Cai Lab papers.

    3

Repositories

Showing 10 of 11 repositories
  • lossy_image_storage_2024 Public
    0 0 0 0 Updated Jan 31, 2024
  • plscm_v1 Public

    Documentation for the parallel-line scanning confocal microscope design

    0 0 0 0 Updated Jan 31, 2024
  • MiCV Public

    MiCV is a python dash-based web-application that enables researchers to upload raw scRNA-seq data and perform filtering, analysis, and manual annotation.

    CSS 6 Apache-2.0 0 0 2 Updated Jan 23, 2023
  • compression_paper_walker2023 Public

    Analysis scripts for "A Comparison of Lossless Compression Methods for Microscopy Data Storage" (Walker 2023)

    Jupyter Notebook 0 0 0 0 Updated Oct 24, 2022
  • nCorrect Public

    A toolkit for the correction and normalization of SWC files from neuron morphology experiments.

    Java 2 GPL-3.0 0 0 0 Updated Aug 30, 2022
  • mmCoreAndDevices Public Forked from micro-manager/mmCoreAndDevices

    Micro-Manager's device control layer, written in C++

    C++ 0 98 0 0 Updated Mar 25, 2022
  • nGauge Public

    A Python library which provides a collection of tools for the measurement, quantification, and visualization of neuron morphology.

    Jupyter Notebook 5 GPL-3.0 1 4 0 Updated Jan 2, 2022
  • nTracer Public

    Rolling release code for the nTracer ImageJ/Fiji plugin, as published in: Roossien DH, et. al, Bioinformatics 2019.

    Java 5 0 0 0 Updated Sep 19, 2021
  • neuron_volume_tools Public
    Jupyter Notebook 0 0 0 0 Updated Dec 7, 2020
  • public_tracing_datasets Public

    Publicly-released neuron tracing datasets from Cai Lab papers.

    3 0 0 0 Updated Nov 10, 2020
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