CFSAN (Center for Food Safety and Applied Nutrition)
Popular repositories
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snp-pipeline
snp-pipeline PublicSNP Pipeline is a pipeline for the production of SNP matrices from sequence data used in the phylogenetic analysis of pathogenic organisms sequenced from samples of interest to food safety.
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Repositories
Showing 10 of 45 repositories
- One_Health_Enteric_Package Public
One Health-compatible metadata package for genomic surveillance of enteric microbes
- MultiLab-POD-LOD-ICC Public
This is a Shiny app for interlaboratory microbiological method validation studies.
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- mlst-hash-template Public template Forked from lskatz/mlst-hash-template
This is a template for any new hash-based MLST database
- microrunqc-wdl Public
- bettercallsal Public
Nextflow workflows to assign Salmonella serotype based on Genome similarity using MASH, SOURMASH and KMA.
- WW-SC2-variant-estimations Public