New release 2.0.1 !

New features

• New default missing values threshold imposed for samples in distance matrix creation
• New default perc_identity_ref value for loci search in allele calling analysis
• Github actions for testing and docker generation.

Bug fixes

• multiple statistic modes bug fixed
• BLAST database creation bug due to punctuation signs in file name fixed
• ST profile identification bug fixed
• Python modules installed from conda-forge in environment.yml

Documentation

• Channel order in conda installation command

New release 2.0.0!!

New features:

Bug fixes:

Taranis beta release 0.3.3 05-Nov-2018

Fix num_threads in blast commands

Taranis beta release 0.3.2 02-Nov-2018

BUG FIX:

• Added ERROR posibility to allele classification, when the allele is not PLOT but is too near to contig end, and protein codification finishes without finding a stop codon.

Taranis beta release 0.3.1 27-Oct-2018

• Added cpus as parameter.

Taranis beta release 0.3.0 25-Oct-2018

Bug fixes:

• Allow dependency check for versions greater than needed.

Features:

• Added graphics for schema evaluation(beta)
• Added SNP calling (beta)

Taranis beta version

• cg/wgMLST analysis using assembled contigs as input using a defined schema. Comparison matrix is generated for phyloviz visualization. Blast hit are classified as Exact match , new allele, etc.
• cg/wgMLST statistics.
• beta: SNP analysis.
• Insertions, deletions and paralogues detection.