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Tibanna helps you run your genomic pipelines on Amazon cloud (AWS). It is used by the 4DN DCIC (4D Nucleome Data Coordination and Integration Center) to process data. Tibanna supports CWL/WDL (w/ docker), Snakemake (w/ conda) and custom Docker/shell command.

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BIMSBbioinfo/tibanna-bimsb

 
 

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Tibanna BIMSB

This is a fork of Tibanna for use with the Rolv platform.

We made changes to awsf3-docker:

  • Remove unused packages from Dockerfile
  • upload debug logs on Snakemake failures

Build

cd awsf3-docker
docker build --build-arg version=4.0.0 .
docker tag $IMAGE bimsbbioinfo/tibanna-bimsb:latest
docker login
docker push bimsbbioinfo/tibanna-bimsb:latest

TODO

  • push to ECR instead of dockerhub
  • change log directory for tibanna logs

About

Tibanna helps you run your genomic pipelines on Amazon cloud (AWS). It is used by the 4DN DCIC (4D Nucleome Data Coordination and Integration Center) to process data. Tibanna supports CWL/WDL (w/ docker), Snakemake (w/ conda) and custom Docker/shell command.

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