Copyright 2017-2018: Bora Uyar, Jona Ronen, Ricardo Wurmus. This work is distributed under the terms of the GNU General Public License, version 3 or later. It is free to use for all purposes.

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Documentation

Please see our documentation in order to find out more about how to install and run the PiGx-RNAseq pipeline: http://bioinformatics.mdc-berlin.de/pigx_docs/pigx-rna-seq.html

Sample Reports

See sample HTML reports produced by PiGx pipelines: http://bioinformatics.mdc-berlin.de/pigx/supplementary-materials.html

Citing PiGx-RNAseq

Wurmus, Ricardo, Bora Uyar, Brendan Osberg, Vedran Franke, Alexander Gosdschan, Katarzyna Wreczycka, Jonathan Ronen, and Altuna Akalin. 2018. “PiGx: Reproducible Genomics Analysis Pipelines with GNU Guix.” GigaScience, October. https://doi.org/10.1093/gigascience/giy123.

Getting help

If you have any questions please e-mail: pigx@googlegroups.com or use the web form to ask questions https://groups.google.com/forum/#!forum/pigx/.

If you run into any bugs, please open an issue here: https://github.com/BIMSBbioinfo/pigx_rnaseq/issues.

Links

• The Bioinformatics and Omics Data Science Platform
• The German Network for Bioinformatics Infrastructure

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