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@AuReMe

AuReMe

AUtomated REconstruction of MEtabolic models

Popular repositories

  1. metage2metabo metage2metabo Public

    From annotated genomes to metabolic screening in large scale microbiotas

    Jupyter Notebook 45 5

  2. mpwt mpwt Public

    Pathway Tools multiprocessing wrapper (for PathoLogic).

    Python 11

  3. emapper2gbk emapper2gbk Public

    Forked from ArnaudBelcour/gff_to_gbk

    Convert GFF, fastas, annotation table and species name into Genbank.

    Python 10 5

  4. padmet padmet Public

    Python library for hAndling metaData of METabolism.

    Python 4 2

  5. aucome aucome Public

    Automatic Comparison of Metabolism

    Python 4

  6. mpwt-docker mpwt-docker Public

    A dockerfile for multiprocessing Pathway-Tools.

    Dockerfile 2

Repositories

Showing 10 of 17 repositories
  • esmecata Public

    From taxonomic affiliations to annotated proteins using UniProt database.

    Python 2 GPL-3.0 1 0 0 Updated May 31, 2024
  • aureme Public
    Python 0 GPL-3.0 0 1 0 Updated Apr 24, 2024
  • prolipipe Public Forked from ytirlet/prolific

    The prolific pipeline is about genome annotation and metabolic pathway reconstruction. From .fasta genomes, it enables to find if strains of bacteria are theorically able to produce metabolites

    Python 0 GPL-3.0 1 0 0 Updated Apr 18, 2024
  • mpwt Public

    Pathway Tools multiprocessing wrapper (for PathoLogic).

    Python 11 LGPL-3.0 0 6 0 Updated Apr 16, 2024
  • metage2metabo Public

    From annotated genomes to metabolic screening in large scale microbiotas

    Jupyter Notebook 45 LGPL-3.0 5 6 0 Updated Apr 5, 2024
  • HoloInteract Public

    Study interactions hosts and microorganisms at metabolic level.

    HTML 0 MIT 0 0 0 Updated Apr 3, 2024
  • emapper2gbk Public Forked from ArnaudBelcour/gff_to_gbk

    Convert GFF, fastas, annotation table and species name into Genbank.

    Python 10 LGPL-3.0 8 8 0 Updated Apr 3, 2024
  • MeneVal Public
    Python 0 GPL-3.0 0 0 0 Updated Apr 3, 2024
  • padmet-utils Public
    Python 1 GPL-3.0 1 0 0 Updated Mar 12, 2024
  • aucome Public

    Automatic Comparison of Metabolism

    Python 4 GPL-3.0 0 1 0 Updated Mar 12, 2024
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