3DGenomes
Pinned
Repositories
- TADbit Public
TADbit is a complete Python library to deal with all steps to analyze, model and explore 3C-based data. With TADbit the user can map FASTQ files to obtain raw interaction binned matrices (Hi-C like matrices), normalize and correct interaction matrices, identify and compare the so-called Topologically Associating Domains (TADs), build 3D models f…
- IMP_BioSystem_Domain_Fly_Genome Public
Example of using IMP to model a region of the Fly genome https://integrativemodeling.org/systems/
- Sox9_METALoci Public
Code example of METALoci applied to H3K27ac for the Sox9 mouse locus during development (E13.5)
- OligoFISSEQ Public
Example of the analysis workflow of one image produced by OligoFISSEQ. All the files needed are contained in this repository
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- colvars Public archive Forked from Colvars/colvars
Collective variables module for molecular simulation and analysis programs