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Hello, When i run megahit, the following error occurred:
2022-08-29 15:41:37 - command /home/menggongli/software/MEGAHIT-1.2.9-Linux-x86_64-static/bin/megahit_core local -c /home/menggongli/project/00.Thyasira_tok/03.metagenome_30/03.Assembly/07.N18/02.N18_2.1k_megahit_out/intermediate_contigs/k119.contigs.fa -l /home/menggongli/project/00.Thyasira_tok/03.metagenome_30/03.Assembly/07.N18/02.N18_2.1k_megahit_out/tmp/reads.lib -t 30 -o /home/menggongli/project/00.Thyasira_tok/03.metagenome_30/03.Assembly/07.N18/02.N18_2.1k_megahit_out/intermediate_contigs/k119.local.fa --kmax 141 2022-08-29 15:44:52 - b'INFO localasm/hash_mapper.cpp : 100 - Number of contigs: 1640900, index size: 97788722' 2022-08-29 15:44:52 - b'INFO localasm/local_assemble.cpp : 315 - Hash mapper construction time elapsed: 195.402377' 2022-08-29 15:44:52 - b'INFO sequence/io/sequence_lib.cpp : 115 - Before reading, sizeof seq_package: 6893653544' 2022-08-29 15:45:09 - b'INFO sequence/io/sequence_lib.cpp : 117 - After reading, sizeof seq_package: 6893653544' 2022-08-29 15:45:09 - b'INFO localasm/local_assemble.cpp : 324 - Read lib time elapsed: 17.097303' 2022-08-29 15:45:11 - b'INFO localasm/local_assemble.cpp : 134 - Lib 0, insert size: 336.00 sd: 65.78' 2022-08-29 15:45:11 - b'INFO localasm/local_assemble.cpp : 330 - Insert size estimation time elapsed: 1.984746' 2022-08-29 15:47:38 - b'INFO localasm/local_assemble.cpp : 221 - Lib 0: total 152181760 reads, aligned 127471371, added 50634256 reads to local assembly' 2022-08-29 15:47:38 - b'INFO localasm/local_assemble.cpp : 338 - Mapping time elapsed: 147.222506' 2022-08-29 15:47:38 - b'INFO localasm/local_assemble.cpp : 232 - Minimum number of reads to do local assembly: 3' 2022-08-29 16:10:20 - Error occurs, please refer to /home/menggongli/project/00.Thyasira_tok/03.metagenome_30/03.Assembly/07.N18/02.N18_2.1k_megahit_out/log for detail 2022-08-29 16:10:20 - Command: /home/menggongli/software/MEGAHIT-1.2.9-Linux-x86_64-static/bin/megahit_core local -c /home/menggongli/project/00.Thyasira_tok/03.metagenome_30/03.Assembly/07.N18/02.N18_2.1k_megahit_out/intermediate_contigs/k119.contigs.fa -l /home/menggongli/project/00.Thyasira_tok/03.metagenome_30/03.Assembly/07.N18/02.N18_2.1k_megahit_out/tmp/reads.lib -t 30 -o /home/menggongli/project/00.Thyasira_tok/03.metagenome_30/03.Assembly/07.N18/02.N18_2.1k_megahit_out/intermediate_contigs/k119.local.fa --kmax 141; Exit code -15
Thank you
The text was updated successfully, but these errors were encountered:
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Hello,
When i run megahit, the following error occurred:
2022-08-29 15:41:37 - command /home/menggongli/software/MEGAHIT-1.2.9-Linux-x86_64-static/bin/megahit_core local -c /home/menggongli/project/00.Thyasira_tok/03.metagenome_30/03.Assembly/07.N18/02.N18_2.1k_megahit_out/intermediate_contigs/k119.contigs.fa -l /home/menggongli/project/00.Thyasira_tok/03.metagenome_30/03.Assembly/07.N18/02.N18_2.1k_megahit_out/tmp/reads.lib -t 30 -o /home/menggongli/project/00.Thyasira_tok/03.metagenome_30/03.Assembly/07.N18/02.N18_2.1k_megahit_out/intermediate_contigs/k119.local.fa --kmax 141
2022-08-29 15:44:52 - b'INFO localasm/hash_mapper.cpp : 100 - Number of contigs: 1640900, index size: 97788722'
2022-08-29 15:44:52 - b'INFO localasm/local_assemble.cpp : 315 - Hash mapper construction time elapsed: 195.402377'
2022-08-29 15:44:52 - b'INFO sequence/io/sequence_lib.cpp : 115 - Before reading, sizeof seq_package: 6893653544'
2022-08-29 15:45:09 - b'INFO sequence/io/sequence_lib.cpp : 117 - After reading, sizeof seq_package: 6893653544'
2022-08-29 15:45:09 - b'INFO localasm/local_assemble.cpp : 324 - Read lib time elapsed: 17.097303'
2022-08-29 15:45:11 - b'INFO localasm/local_assemble.cpp : 134 - Lib 0, insert size: 336.00 sd: 65.78'
2022-08-29 15:45:11 - b'INFO localasm/local_assemble.cpp : 330 - Insert size estimation time elapsed: 1.984746'
2022-08-29 15:47:38 - b'INFO localasm/local_assemble.cpp : 221 - Lib 0: total 152181760 reads, aligned 127471371, added 50634256 reads to local assembly'
2022-08-29 15:47:38 - b'INFO localasm/local_assemble.cpp : 338 - Mapping time elapsed: 147.222506'
2022-08-29 15:47:38 - b'INFO localasm/local_assemble.cpp : 232 - Minimum number of reads to do local assembly: 3'
2022-08-29 16:10:20 - Error occurs, please refer to /home/menggongli/project/00.Thyasira_tok/03.metagenome_30/03.Assembly/07.N18/02.N18_2.1k_megahit_out/log for detail
2022-08-29 16:10:20 - Command: /home/menggongli/software/MEGAHIT-1.2.9-Linux-x86_64-static/bin/megahit_core local -c /home/menggongli/project/00.Thyasira_tok/03.metagenome_30/03.Assembly/07.N18/02.N18_2.1k_megahit_out/intermediate_contigs/k119.contigs.fa -l /home/menggongli/project/00.Thyasira_tok/03.metagenome_30/03.Assembly/07.N18/02.N18_2.1k_megahit_out/tmp/reads.lib -t 30 -o /home/menggongli/project/00.Thyasira_tok/03.metagenome_30/03.Assembly/07.N18/02.N18_2.1k_megahit_out/intermediate_contigs/k119.local.fa --kmax 141; Exit code -15
Thank you
The text was updated successfully, but these errors were encountered: