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create snakemake wrapper for msp? #2104

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andrewkern opened this issue Aug 10, 2022 · 2 comments
Open

create snakemake wrapper for msp? #2104

andrewkern opened this issue Aug 10, 2022 · 2 comments
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@andrewkern
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andrewkern commented Aug 10, 2022 •
edited

TIL that snakemake now has features "tool wrappers" which allows popular command line tools to be used more simply with snakemake workflows: https://snakemake.readthedocs.io/en/stable/tutorial/additional_features.html#tool-wrappers

I wonder if users would like an msp wrapper? there is a repo for submitting new tool wrappers here https://snakemake-wrappers.readthedocs.io/en/stable/
@jeromekelleher
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Nice! The msp cli doesn't do an awful lot though, so I'm not sure what workflows we'd be simplifying?

@andrewkern
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yeah, agreed! but maybe it would help someone? obviously not high priority

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@jeromekelleher @andrewkern