vcf
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This repo contains CPP scripts to perform certain tasks
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Mar 28, 2021 - C++
VCF (Variant Call Format) parser optimized for stream processing of large files
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Aug 7, 2020 - C++
Small GATK alignment and variant calling pipeline using python
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Jul 18, 2022 - Python
A bunch of C++ programs for working with bioinformatics files
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Mar 23, 2024 - C++
A command line tool (in Kotlin/JVM) for intuitively visualizing BAM alignments. (Currently unmaintained)
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Jan 7, 2024 - Java
PopGenHelpR is an R package that estimates commonly used population genomic statistics and generates publication quality figures.
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May 9, 2024 - R
Convert structural variants to sequence graphs [ VCF + FASTA ---> GFA ]
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Mar 6, 2024 - C++
Convert SV VCFs to BED, a wrapper for bcftools query
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Jul 20, 2019 - Python
CSV to VCF (virtual contact file) generator in Python
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Dec 14, 2020 - Python
SAMtools and BCFtools (v1.10) for manipulating next-generation sequencing data, from bioconda
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May 18, 2020 - Dockerfile
Eurorack filter based on CEM/AS3320 used in Synthesizers
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Apr 9, 2022
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