tools for working with genome variation graphs
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Updated
Jun 12, 2024 - C++
tools for working with genome variation graphs
Library to parse, edit and handle in memory GFA graphs
Pangenome graphs visualisation, distance computing, reconstruction of sequences and other utility functions
Analysis of shared parts of a pangenome
Modular Multi-scale Integrated Genome Graph Browser
Notes upon pangenome graphs construction
Handlegraph RDF writers in java for working with variation graph genome data.
SV genotyper for long reads with a variation graph
A web-based, interactive pangenome visualization tool
An accurate aligner of long reads to a variation graph, based on co-linear chaining
Linear-time, low-memory construction of variation graphs
A tool for modelling graphs of genetic variation.
A Go library for working with Graphical Fragment Assembly format
This is experiment to measure performance in vg recalibrate, testing different models.
Convert structural variants to sequence graphs [ VCF + FASTA ---> GFA ]
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