tools for working with genome variation graphs
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Updated
Jun 12, 2024 - C++
tools for working with genome variation graphs
Modular Multi-scale Integrated Genome Graph Browser
An accurate aligner of long reads to a variation graph, based on co-linear chaining
A Go library for working with Graphical Fragment Assembly format
Pangenome graphs visualisation, distance computing, reconstruction of sequences and other utility functions
Library to parse, edit and handle in memory GFA graphs
A tool for modelling graphs of genetic variation.
This is experiment to measure performance in vg recalibrate, testing different models.
SV genotyper for long reads with a variation graph
Linear-time, low-memory construction of variation graphs
Analysis of shared parts of a pangenome
Notes upon pangenome graphs construction
A web-based, interactive pangenome visualization tool
Convert structural variants to sequence graphs [ VCF + FASTA ---> GFA ]
Handlegraph RDF writers in java for working with variation graph genome data.
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