Quickly search, compare, and analyze genomic and metagenomic data sets.
-
Updated
Jun 9, 2024 - Python
Quickly search, compare, and analyze genomic and metagenomic data sets.
Meteor is a plateform for quantitative metagenomics profiling of complex ecosystems. Meteor relies on genes catalogue to perform specie level taxonomic assignments and functional analysis.
A pipeline for taxonomic classification and functional annotation of metagenomic reads. Based on MEDUSA
Highly parallelised multi-taxonomic profiling of shotgun short- and long-read metagenomic data
Thesis projects
Forecasting the Adoption Process of Technology Using ML Methods
Metabuli: specific and sensitive metagenomic classification via joint analysis of DNA and amino acid.
Amplicon sequencing analysis workflow using DADA2 and QIIME2
Static site generator "Databaseless" CMS: Content is just (git friendly) markdown with multidimensional topic/tags/taxonomy extensions that both humans and AI will appreciate.
A reporting tool for aggregating results from taxonomic classification analyses
A formal taxonomy to classify JSON documents based on their size, type of content, characteristics of their structure and redundancy criteria.
The `crest4` python package can automatically assign taxonomic names to DNA sequences obtained from environmental sequencing.
Grails 3 port of NSL services
ultrafast genome querying and taxonomic profiling for metagenomic samples by abundance-corrected minhash.
Prepare a report for taxonomic assignment based on 16S rRNA sequences, using BLAST.
Benchmarking different ways of doing read (taxonomic) classification, with a focus on removal of contamination and MTB classification
A pipeline to identify (and remove) certain sequences from raw genomic data. Default taxa to identify (and remove) are Homo and Homo sapiens. Removal is optional.
Benchmarking various taxonomic classifiers for profiling soil metagenomic data, with scripts and tools tailored for fungal, bacterial, and archaeal genome identification.
Lemur is a tool for rapid and accurate taxonomic profiling on long-read metagenomic datasets
Accurate taxonomic classification and abundance profiling using locality-sensitive hashing.
Add a description, image, and links to the taxonomic-classification topic page so that developers can more easily learn about it.
To associate your repository with the taxonomic-classification topic, visit your repo's landing page and select "manage topics."