A repository for the Playbook Workflow Builder project.
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Updated
Jun 10, 2024 - TypeScript
A repository for the Playbook Workflow Builder project.
MultiNicheNet: a flexible framework for differential cell-cell communication analysis from multi-sample multi-condition single-cell transcriptomics data
Chemical reaction network and systems biology interface for scientific machine learning (SciML). High performance, GPU-parallelized, and O(1) solvers in open source software.
A collection of mathematical models with experimental data in the PEtab format as benchmark problems in order to evaluate new and existing methodologies for data-based modelling
Software tool for the compilation of Heta-based QSP modeling platform
SyBValS: Systems Biology Validation Service
INDRA (Integrated Network and Dynamical Reasoning Assembler) is an automated model assembly system interfacing with NLP systems and databases to collect knowledge, and through a process of assembly, produce causal graphs and dynamical models.
A Python package for analyses of Boolean and semi-quantitative Boolean networks.
Toolbox for including enzyme constraints on a genome-scale model.
Picotti lab data analysis package.
My personal website
A package for researchers working with biological oscillations
The biologist's Boolean attractor landscape mapper, building Waddington landscapes from Boolean networks.
The CoLoMoTo Interactive Notebook: Accessible and Reproducible Computational Analyses for Qualitative Biological Networks
For finding, sharing and exchanging Data, Models, Simulations and Processes in Science.
python Parameter EStimation TOolbox
Antimony language support for IntelliJ Platform IDEs
Estimation of extracellular fluxes and growth rate
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