This is a repository containing code to generate Synthetic Datasets for software-development applications within the field of SyntheticBiology.
-
Updated
May 27, 2024 - Python
Synthetic biology (SynBio) is a multidisciplinary area of research that seeks to create new biological parts, devices, and systems, or to redesign systems that are already found in nature.
This is a repository containing code to generate Synthetic Datasets for software-development applications within the field of SyntheticBiology.
SynBio Source is an open-source platform designed for the Synthetic Biology community, enabling easy sharing and management of datasets. It offers intuitive uploading and searching capabilities, with the goal of fostering a unified metadata standard to enhance accessibility and collaboration within the field.
Advancing chloroplast synthetic biology through high-throughput plastome engineering of Chlamydomonas reinhardtii
A Go package for engineering organisms.
Reinforcement Learning based bioretrosynthesis tool
A Go package for designing DNA.
Resources for learning Biotechnology, Biology, Synthetic Biology, Genomic and Bioinformatic
Suite of tools that work on rpSBML format
(In development) Microservices full-stack single-page web app built with Typescript, React, Redux, Styled Components (for CSS-in-JS), Python, Django, Redis, and PostgreSQL. Separate servers for LIMS and Payments hosted on AWS EC2 instances with Kubernetes and circleci CI/CD. Database hosted on AWS DynamoDB. CDN through AWS Cloudfront and DNS thr…
python scripts that can be easily trasformed to gui programs for wet lab scientists to use
Python wrapper for Retropath2.0 Knime workflow
collection of miscellaneous command line bioinformatic scripts
A library for the Synthetic Biology Open Language (SBOL) written in TypeScript, for JavaScript/TypeScript applications in the browser or node.js
Blog on the computational side of synthetic biology and DNA manufacturing
✏️ A versatile DNA sequence optimizer
Convert rpSBML file to SBOL + CSV files ready to be used by DNA-Bot.