Global Biotic Interactions provides access to existing species interaction datasets
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Updated
May 23, 2024 - Java
Global Biotic Interactions provides access to existing species interaction datasets
Multi-species size-based ecological modelling in R
Scalable joint species distribution modeling
A updatet code for the paper Bastazini et al. 2017
paper
Explicit Interaction Community Models
Host plant-aphid association data from M.E. Palmer's (1952) "Aphids of the Rocky Mountain Region"
Kinetic Monte Carlo simulator for cross-feeding species growth
Development version of phaseR, an R package for phase plane analysis of one- and two-dimensional autonomous ODE systems
Supplement to the paper Queiroz et al. (2020, Biotropica).
Meet nestor, an R package for the variational inference of species interaction networks from abundance data, while accounting for missing actors.
Supplementary data from Crestani et al. 2018 (Acta Oecologica)
Supplementary information from Pacelhe et al. 2019 (Biotropica)
Species interactions of EU List of Concern Species
Fit multivariate state-space autoregressive models in Jags
My personal pipeline to species identification on camera trap pix using deep learning, detection/classification with MegaDetector and RetinaNet
Simulate data and fit 2-species occupancy model à la Rota et al. (2016) w/ Unmarked
Dataset of palm-frugivore seed dispersal interactions
Plant-Frugivore Interactions for South East Asia mined from published literature
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