My personal pipeline to species identification on camera trap pix using deep learning, detection/classification with MegaDetector and RetinaNet
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Updated
May 20, 2020 - Python
My personal pipeline to species identification on camera trap pix using deep learning, detection/classification with MegaDetector and RetinaNet
Species interactions of EU List of Concern Species
Plant-Frugivore Interactions for South East Asia mined from published literature
A updatet code for the paper Bastazini et al. 2017
paper
Supplement to the paper Queiroz et al. (2020, Biotropica).
Repository of the article: A synthesis of animal-mediated seed dispersal of palms reveals distinct biogeographic differences in species interactions
Fit multivariate state-space autoregressive models in Jags
Host plant-aphid association data from M.E. Palmer's (1952) "Aphids of the Rocky Mountain Region"
Dataset of palm-frugivore seed dispersal interactions
Supplementary information from Pacelhe et al. 2019 (Biotropica)
Supplementary data from Crestani et al. 2018 (Acta Oecologica)
Shiny app to help identify pairwise species interactions occurrences in literature
Meet nestor, an R package for the variational inference of species interaction networks from abundance data, while accounting for missing actors.
Kinetic Monte Carlo simulator for cross-feeding species growth
Explicit Interaction Community Models
Brodie J.E., Helmy O., Mohd-Azlan J., Granados A., Bernard H., Giordano A., and Zipkin E.F. 2018. Models for assessing local-scale co-abundance of animal species while accounting for differential detectability and varied responses to the environment. Biotropica. 50: 5-15.
Development version of phaseR, an R package for phase plane analysis of one- and two-dimensional autonomous ODE systems
Simulate data and fit 2-species occupancy model à la Rota et al. (2016) w/ Unmarked
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