Workflow and config files for searching (very) large public databases with sourmash sketches
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Updated
Aug 28, 2023 - Standard ML
Workflow and config files for searching (very) large public databases with sourmash sketches
Explore microbial contamination in human whole-genome shotgun data sets, using sourmash
Build a sourmash contamination database for the seqqc nextflow pipeline
The essence of sourmash. An experimental CLI with a subset of the sourmash features, mainly used to drive development of features in the core library.
Project template for sourmash-based characterization of genomes and metagenomes
Example workflows and useful scripts for building your own sourmash databases
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To associate your repository with the sourmash topic, visit your repo's landing page and select "manage topics."