Fast ordered sampling of rows from large text or binary files. Special cases for DNA variant files (.bed, VCF, HapMap, etc).
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Updated
Jan 12, 2021 - C++
Fast ordered sampling of rows from large text or binary files. Special cases for DNA variant files (.bed, VCF, HapMap, etc).
R code used for the master thesis entitled "Germline variants associated with prognosis of patients with non muscle invasive bladder cancer".
Practical and home works in the discipline Bioinformatics.
Principal Component Analysis, PCA, Gaussian Markov Random Fields, Graphical model,
The Soybean Genomic Variations Explorer (Soybean GenVarX) is a toolset that consists of promoter region component and CNV component for users to perform queries, visualize data, and conduct annotations using genotypic and phenotypic differences.
A tutorial for reproducting outlier tests based on temporal differentiation
Wrapper scripts for TASSEL (Trait Analysis by aSSociation, Evolution and Linkage) and UNEAK (Universal Network Enabled Analysis Kit) v3.0 Genotyping by Sequencing (GBS) analysis pipelines
Find risk snp in the LD region of GWAS snps by convolutional neural network
A collection of scripts documenting the parameter settings used to apply variant discovery to the exploration of Duodenal Polyposis.
Facilitates post-processing of SNP pipeline outputs
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