🦠📇 Genomes to report pipeline - for Bacteria and Archaea
-
Updated
Jun 7, 2024 - Python
🦠📇 Genomes to report pipeline - for Bacteria and Archaea
A Snakemake workflow for performing genomic region set and gene set enrichment analyses using LOLA, GREAT, and GSEApy.
A rapid pipeline for targeted ONT monkeypox sequencing
PyPSA-Eur: A Sector-Coupled Open Optimisation Model of the European Energy System
🔬🖥 Automated Blood Vasculature Analysis of 3D Light-Sheet Image Volumes
Estimación de turbidez en el agua a la entrada de la planta de tratamiento de SAMEEP, utilizando los productos Sentinel-2 MSI L2A y aprendizaje automático.
Endogenous Retrovirus Expression Pipeline for Human and Mouse for use with bulk RNA
Metagenomics and Metatranscriptomics pipeline
This is the development home of the workflow management system Snakemake. For general information, see
RNA-seq workflow using STAR and DESeq2
A Snakemake workflow for differential expression analysis of RNA-seq data with Kallisto and Sleuth.
A Snakemake workflow for calling small and structural variants under any kind of scenario (tumor/normal, tumor/normal/relapse, germline, pedigree, populations) via the unified statistical model of Varlociraptor.
Configure workflow/pipeline tests using yaml files.
A pipeline for taxonomic classification and functional annotation of metagenomic reads. Based on MEDUSA
The CGR GWAS QC processing workflow.
Add a description, image, and links to the snakemake topic page so that developers can more easily learn about it.
To associate your repository with the snakemake topic, visit your repo's landing page and select "manage topics."