Official git repository for Biopython (originally converted from CVS)
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Updated
Jun 7, 2024 - Python
Official git repository for Biopython (originally converted from CVS)
Derive ΔG for single residues from HDX-MS data
SaprotHub: Making Protein Modeling Accessible to All Biologists
The Integrative Modeling Platform
mdciao: Analysis of Molecular Dynamics Simulations Using Residue Neighborhoods
The Rosetta Bio-macromolecule modeling package.
macromolecular crystallography library and utilities
Voronota is a software tool for analyzing three-dimensional structures of biological macromolecules using the Voronoi diagram of atomic balls.
protein conformational spaces meet machine learning
Toolbox for molecular animations in Blender, powered by Geometry Nodes.
DiffModeler: a diffusion model based protein complex structure modeling tool.
Python Modeling Interface
Pipeline for searching and aligning contact maps for proteins, then running DeepFri's GCN.
Base Scipion plugin defining objects and protocols for CHEMoinformatics
The library to support reading and writing of RMF files.
A nano protein structure prediction model based on DeepMind's AlphaFold paper
C++ package that provides tools for correcting structural predictions of proteins (eg. from X-Ray Crystallography or AlphaFold) using X-ray small-angle scattering (SAXS) in solution
Molecular simulation in Julia
Protein Graph Library
Fusion of protein sequence and structural information, using denoising pre-training network for protein engineering (zero-shot).
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