Protecting from Envelope Stress: Variations on the Phage-shock-protein theme
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Updated
Jul 9, 2018
Protecting from Envelope Stress: Variations on the Phage-shock-protein theme
Pipeline which make phylogeny with sequence of different sample
A (not so) basic course of comparative biology.
Phlorest phylogeny derived from Sagart et al. 2019 'Dated language phylogenies shed light on the ancestry of Sino-Tibetan'
Phylogenetic tree of LAR and other PIP family enzymes as shown in Güngör et al. 2020. This repository details all code and intermediate files used.
Data and analysis for the DciA evolution manuscript | StallingsLab & JRaviLab
Phlorest phylogeny derived from Sicoli & Holton 2014 'Linguistic phylogenies support back-migration from Beringia to Asia'
Real-time analytics for large-scale classification of viral genome sequences using Feature Frequency Profile method
Phlorest phylogeny derived from De Filippo et al. 2012 'Bringing together linguistic and genetic evidence to test the Bantu expansion'
This simulates cell lineage using eSTGt, reconstructs the lineage tree based on the mutation table generated by the simulation, and finally outputs various comparison metrics between the simulation and reconstruction.
Phlorest phylogeny derived from Hruschka et al. 2015 'Detecting regular sound changes in linguistics as events of concerted evolution'
Phlorest phylogeny derived from Lee & Hasegawa 2013 'Evolution of the Ainu Language in Space and Time'
🌲👻 Testing the phylogenetic reality of the living fossil with an EDBMM
Methods for the analyses described in Álvarez-Carretero, et al. 2019 (https://doi.org/10.1093/sysbio/syz015)
Context-Aware Phylogenetic Trees for Phylogeny-based Taxonomy Visualization
Companion repository to the Internalin P Listeria manuscript | HardyLab & JRaviLab
Indel viewer software for ARPIP
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