Protecting from Envelope Stress: Variations on the Phage-shock-protein theme
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Updated
Jul 9, 2018
Protecting from Envelope Stress: Variations on the Phage-shock-protein theme
Pipeline which make phylogeny with sequence of different sample
A (not so) basic course of comparative biology.
Phlorest phylogeny derived from Sagart et al. 2019 'Dated language phylogenies shed light on the ancestry of Sino-Tibetan'
a ITIS search wrapper to be used with Petrie
phyDBSCAN: Building alternative phylogenetic trees using DBSCAN and Robinson and Foulds distance
Phylogenetic tree of LAR and other PIP family enzymes as shown in GΓΌngΓΆr et al. 2020. This repository details all code and intermediate files used.
Data and analysis for the DciA evolution manuscript | StallingsLab & JRaviLab
Phlorest phylogeny derived from Sicoli & Holton 2014 'Linguistic phylogenies support back-migration from Beringia to Asia'
This simulates cell lineage using eSTGt, reconstructs the lineage tree based on the mutation table generated by the simulation, and finally outputs various comparison metrics between the simulation and reconstruction.
UPGMA Trait-Based Phlyogenetic Tree Generator With Optional Parsimony Capabilities
R package to visualize Synteny across biological species
Phlorest phylogeny derived from Hruschka et al. 2015 'Detecting regular sound changes in linguistics as events of concerted evolution'
Phlorest phylogeny derived from Lee & Hasegawa 2013 'Evolution of the Ainu Language in Space and Time'
Phylogenetic compression of extremely large genome collections [661k βππ²ππΆπ | BIGSIdata βπ°π΄ππΆπ | AllTheBact'23 βπ³π±ππΆπ]
π²π» Testing the phylogenetic reality of the living fossil with an EDBMM
Methods for the analyses described in Γlvarez-Carretero, et al. 2019 (https://doi.org/10.1093/sysbio/syz015)
Building a fully automized pipeline for phylogenomic analyses based on the GEMOMA annotation pipeline
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