An ultrafast and memory efficient tool for phylogenomics
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Updated
Jun 1, 2024 - Rust
An ultrafast and memory efficient tool for phylogenomics
Materials for course about processing HybSeq data on computing grids
PhyloFisher is a software package written in Python3 that can be used for the creation, analysis, and visualization of phylogenomic datasets that consist of eukaryotic protein sequences.
An analysis and visualization platform for 'omics data
Phylotranscriptomic analysis pipeline
Snakemake pipeline to construct species phylogenies using BUSCOs
Scripts published in: Torres, A., Goloboff, P. A., & Catalano, S. A. (2022). Parsimony analysis of phylogenomic datasets (I): scripts and guidelines for using TNT (Tree Analysis using New Technology). Cladistics, 38(1), 103-125. doi:10. 1111/cla.12477
a toolkit for evaluation of the lenght of k-mer in a given genome dataset for alignment-free phylogenimic analysis.
Scripts for Hill et al. (in review) 🌾
python PhyloGenomic, Core and Fingerprint analyses software
A Snakemake-workflow to sample taxa from sequence databases based on taxonomical or phylogenetic information
Hyb-Seq target capture of 1,726 low-copy loci for phylogenomics in the angiosperm family Asparagaceae
a UNIX shell toolkit for processing and analyzing multiple sequence alignments and phylogenies
a multiple sequence alignment-trimming algorithm for accurate phylogenomic inference
The Visualization Multitool for Molecular Epidemiology and Bioinformatics
Evolutionary genomics of chromosomal inversions in Atlantic herring
A pipeline to select optimal markers for microbial phylogenomics and species tree estimation using the multispecies coalescent and concatenation approaches
A repository for code that generates various simulated data.
Set of scripts to process HybSeq target enrichment HTS data (on computing grids).
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