Building a fully automized pipeline for phylogenomic analyses based on the GEMOMA annotation pipeline

Parsimonious delimitation of large SNP datasets using the four gamete test

A shiny app to summarize and evaluate the results of Bayesian phylogenetic analyses

A repository for code that generates various simulated data.

Evolutionary genomics of chromosomal inversions in Atlantic herring

MrBayes, a program for Bayesian inference and model choice across a wide range of phylogenetic and evolutionary models.

Two pipelines to perform phylogenomic analysis

python PhyloGenomic, Core and Fingerprint analyses software

phylogenetic visualization application

Archived code for analyses in "Extensive phylogenomic discordance and the complex evolutionary history of the Neotropical cat genus Leopardus" (Lescroart et al. 2023, MBE)

Macroevolutionary analyses of the Monodoreae tribe (Annonaceae) 🧬🌳🌍

Presentation delivered at the 2017 EUPHRESCO workshop in Edinburgh, 1st November 2017

Differential Gene Expression, Phylogenetic tree, Sequence Alignments, Biostatistics, Bioinformatic

Scripts for Hill et al. (in review) 🌾

R package for identifying discordant phylogenetic trees in a sample

#Scripts to create Kraken2 database of PAFTOL V2.0 Angio353 genes. An excellent database for taxonomic identification of plants. #https://treeoflife.kew.org/ #https://github.com/DerrickWood/kraken2/wiki #Prior to using this script, download and install kraken2 and make sure it is working and in your PATH. #Make sure the location of the python sc…

An ultrafast and memory efficient tool for phylogenomics

Phylogenomics analyses for 1KFG project

Examples of Molecular Phylogenomics figures created from self-taught usage of MEGA-X software.

Intron extraction procedure