Tools for phylogenetic data analysis including visualization and cluster-computing support.
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Updated
Aug 10, 2018 - Python
Tools for phylogenetic data analysis including visualization and cluster-computing support.
Protracted Birth-Death model in R
Code for real-time monitoring of diseases in agriculture using the MinION sequencer (Radhakrishnan et al., 2019 BMC Biology)
An alignment-free method capable of processing and counting k-mers in a reasonable time, while evaluating multiple values of the k parameter concurrently.
R script useful during phylogenetic comparative analyses
ColabSeq: The one-stop shop for all of your multiple sequence analysis needs.
Calculating probabilities of sequences transforms with evolution model in time
Web App for constructing phylogenetic trees using various clustering methods and algorithms.
Phylogenetic tree maker for alignment and phylogeny inference. Performs global and local sequence alignments using the Needleman-Wunsch and Smith-Waterman algorithms, followed by tree construction via the Neighbor-Joining method.
Biogeography and species delimitation of the rheophilic suckermouth-catfish genus _Pseudolithoxus_ (Siluriformes: Loricariidae), with the description of a new species from the Brazilian Amazon
RAxML agave app and docker image
A phylogenetic pipeline for inferring a species/genome tree from a set of genomes by clustering, inferring gene families and their trees
Evaluating the Use of Bulk and Single-Cell Sequences in Phylogenetic Analyses of Multi-tumour Evolution
Efficient computations of higher-order phylogenetic moments and derivatives
A nextflow pipeline to run phylogenetic analyses using SNPs
Mini workshop introducing the supersmartR packages and pipeline
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