Tools for phylogenetic data analysis including visualization and cluster-computing support.
Protracted Birth-Death model in R
R script useful during phylogenetic comparative analyses
Phylogenetic biogeography SSE models for large state spaces
ColabSeq: The one-stop shop for all of your multiple sequence analysis needs.
Calculating probabilities of sequences transforms with evolution model in time
A collection of phylogenetics tutorials delivered to colleagues at the Centre for Biological Control (CBC). Topics include producing Bayesian and Maximum Likelihood trees, haplotype networks, reading phylogenies into R, analysing ISSR and SSR data, and using STRUCTURE and SplitsTree.
Web App for constructing phylogenetic trees using various clustering methods and algorithms.
Phylogenetic tree maker for alignment and phylogeny inference. Performs global and local sequence alignments using the Needleman-Wunsch and Smith-Waterman algorithms, followed by tree construction via the Neighbor-Joining method.
Biogeography and species delimitation of the rheophilic suckermouth-catfish genus _Pseudolithoxus_ (Siluriformes: Loricariidae), with the description of a new species from the Brazilian Amazon
RAxML agave app and docker image
Embedded Dependency (ED) models for inapplicable characters
An R package that provides a base S4 class for comparative methods, incorporating one or more trees and trait data
a python package for automated generation of phylogenetic trees from genbank files
Add a description, image, and links to the phylogenetics topic page so that developers can more easily learn about it.
To associate your repository with the phylogenetics topic, visit your repo's landing page and select "manage topics."