A simple PHP library to build phylogenic trees from distance matrix

Python practice

(ongoing)A graphic-based phylogenetic tree reconstruction tool that implements distance-based methods, UPGMA, neighbour-joining, maximum parsimony etc.

A codebase to extract a specific set of genes from bacteria gene sequences and construct phylogenetic trees to analyse the evolution of bacteria using them.

A phylogenetic pipeline for inferring a species/genome tree from a set of genomes by clustering, inferring gene families and their trees

The NMFSt.P Notebook is introduced as a tool in bioinformatics for conducting exploratory analysis on phylogenetic trees. It simplifies the comparison of multiple trees to identify frequent subtrees, addressing the computational intensity and laboriousness associated with this task, particularly in scenarios involving large input tree sets.

Phylogenetic trees in Julia

Convert html phylogenetic trees from a wikipedia article into a standard bioinformatics format.

ColabSeq: The one-stop shop for all of your multiple sequence analysis needs.

Likelihood computation of a phylogenetic tree for dummies

Web App for constructing phylogenetic trees using various clustering methods and algorithms.

Bioinformatics is about applying computational and mathematical thinking to the biological sciences, changing how we approach scientific problems and increasing the scale and complexity of the problems we are able to solve.

Context-Aware Phylogenetic Trees for Phylogeny-based Taxonomy Visualization

Private computation of phylogenetic trees based on PHYLIP

UPGMA clustering of constructing phylogenetic relationships implemented from scratch

Course project: Bioinformatics (BIO) ➟ Multiple sequence alignment of 10 genetic sequences of SARS-2 (gene 3) – T-Coffee

Contructs bifurcating phylogenetic trees from data that has an associated distance function, e.g. protein or DNA sequences

Tools for (Gene) Ontology-Based Phylogenetics Methods

Models to predict sensitivity of freshwater species to metals

[a.a. 22/23] N.P. Santorsa, G. Margarella