A simple PHP library to build phylogenic trees from distance matrix
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Updated
Oct 22, 2017 - PHP
A simple PHP library to build phylogenic trees from distance matrix
(ongoing)A graphic-based phylogenetic tree reconstruction tool that implements distance-based methods, UPGMA, neighbour-joining, maximum parsimony etc.
A codebase to extract a specific set of genes from bacteria gene sequences and construct phylogenetic trees to analyse the evolution of bacteria using them.
Sequence2Branches: Creating a species-level phylogenetic tree from paired FASTQ reads
The NMFSt.P Notebook is introduced as a tool in bioinformatics for conducting exploratory analysis on phylogenetic trees. It simplifies the comparison of multiple trees to identify frequent subtrees, addressing the computational intensity and laboriousness associated with this task, particularly in scenarios involving large input tree sets.
Convert html phylogenetic trees from a wikipedia article into a standard bioinformatics format.
ColabSeq: The one-stop shop for all of your multiple sequence analysis needs.
UPGMA Trait-Based Phlyogenetic Tree Generator With Optional Parsimony Capabilities
Likelihood computation of a phylogenetic tree for dummies
Web App for constructing phylogenetic trees using various clustering methods and algorithms.
Implementations of Bioinformatics algorithms in Python
Bioinformatics is about applying computational and mathematical thinking to the biological sciences, changing how we approach scientific problems and increasing the scale and complexity of the problems we are able to solve.
Context-Aware Phylogenetic Trees for Phylogeny-based Taxonomy Visualization
This is a pipeline that can be used to generate a phylogenetic tree, including a heatmap showing carriage of specific genes, the assigned phylogroup of each strain, and the names of each strain. It should now be capable of working with any sort of strains - currently I'm working on making small improvements.
Private computation of phylogenetic trees based on PHYLIP
Adobe Illustrator scripts which supports phylogenetic tree operation
Some Tropical Matrices
lightweight GUI using wxPython that assembles a string to run ASTRAL from the command line.
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